PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM08G15970.4
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HB-other
Protein Properties Length: 249aa    MW: 27673.2 Da    PI: 5.5414
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM08G15970.4genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox215.9e-0769116346
                      --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHH CS
         Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkv 46 
                      k   +t+eq+e+Le+++  +++p   +r++L  ++    +++ +q+kv
  OGLUM08G15970.4  69 KYVHYTPEQVEALERVYTDCPKPISVHRQQLLCECpilaNIEPKQIKV 116
                      66789****************************************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    
MAEDDYNDMD MGEQEKTARP WKTSKYMTKY ERASILGTRA LQISMNAPVM VELEWGTDPL  60
EVSGMDSCKY VHYTPEQVEA LERVYTDCPK PISVHRQQLL CECPILANIE PKQIKVAAHH  120
NGHGTSHENH TQESESSVEQ HDPESQDDIS IKATPADESP PEETSAAPTK EQDFVDLAGS  180
EQAAQTHAVG ARLKEGCHIN RSLLTLTTVI RELRKAKCGL FVTHGVMPIA KIDVGRSKLS  240
SHKEAPMVK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.19e-24HD-ZIP family protein