PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM08G16100.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 235aa    MW: 26302.3 Da    PI: 8.5851
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM08G16100.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF45.68.7e-151050242
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                     ri n+ +r   f kR++g+ KKA+ELS+LC ++ +++++++
  OGLUM08G16100.1 10 RIINDAKRRAAFKKRLKGLKKKASELSTLCSVDTCLMVYGE 50
                     899************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    
MARNKVKLQR IINDAKRRAA FKKRLKGLKK KASELSTLCS VDTCLMVYGE GEVQATEVWP  60
SVQEATRVLE RFKAMPQLDR YKKTMDLDGF IKERTDKLQE KLHKVRRDAD ESETKILIVE  120
AFYSRCAGLE DLTIEQLTSL GWMADAQLKI VNNHFQKLCE QGLLPESASL SGMNVPPYTI  180
AGYLAVEEAQ MQREGWLMTI ARGIGSLGYN GFEGSSGSAT AEPNGDMVQY LNKGA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.16e-23M-type_MADS family protein