PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM08G19140.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ZF-HD
Protein Properties Length: 290aa    MW: 29743.2 Da    PI: 7.0575
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM08G19140.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer102.52.7e-3261115459
      ZF-HD_dimer   4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                      +rY+eClkNhA+ +GghavDGCgEfm++ geeg+++al+CaACgCHRnFHR+e+e+
  OGLUM08G19140.1  61 ARYRECLKNHAVGIGGHAVDGCGEFMAA-GEEGSIDALRCAACGCHRNFHRKESES 115
                      79*************************9.999********************9875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    
MDFDDHDEGD GDEEMPPMPL SSGYDAPMQP GLGGGGGGVP KPGGGVGGGG GGGGGGGGGG  60
ARYRECLKNH AVGIGGHAVD GCGEFMAAGE EGSIDALRCA ACGCHRNFHR KESESPTGVG  120
PAEPSAVSPA AISAYGASPH HQFSPYYRTP AGYLHHQQHQ MAAAAAAAAA AAAGGYPQRP  180
LALPSTSHSG RDEGDDMSGM VGPMVIGPMV GMSLGSAGPS GSGSGKKRFR TKFTQEQKDK  240
MLAFAERLGW RIQKHDEAAV QQFCEEVCVK RHVLKVWMHN NKHTLGKKAP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.12e-60ZF-HD family protein