PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM08G19420.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 363aa MW: 38005.4 Da PI: 6.2893

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM08G19420.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38	2.9e-12	138	188	1	54
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +r++h ++Er+RR+++N+ ++ Lr+l+ + + ++ + a+i A++Y+k++ OGLUM08G19420.1 138 QRMTHIAVERNRRKQMNEYLAVLRSLMAAS---YVQRGDQASIIGGAINYVKEM 188 79**************************...9***************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence
MALEAVVFSE GYYFGCGGAM AAEAAAGGAW SWSHGYGGGV DQGKGVMELV VDDGVVNAFW 60 DGGGGGASSS PVMAAVPGFI EEPDGGNSSV ADAAPPPEHG GASVVGRDGS AAAPAAAAGR 120 RKRRRARTVK NREEVESQRM THIAVERNRR KQMNEYLAVL RSLMAASYVQ RGDQASIIGG 180 AINYVKEMEQ LLQSLEAHRH ARRARTDAAA ALPFAGFFTF PQYSMSAVPT TTTTTVSAAA 240 TENGNAVAGA GAGDDADADA SGSKPSSVAD IEVTMVESHA NLKVLSRRRP RQLLRMVAGL 300 QHHRLAVLHL NVASAGHMAL YSLSLKVEDD CQLTSVDDIA AAVHGIVETI EQEQQQQQKQ 360 SCS

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence

MALEAVVFSE GYYFGCGGAM AAEAAAGGAW SWSHGYGGGV DQGKGVMELV VDDGVVNAFW  60
DGGGGGASSS PVMAAVPGFI EEPDGGNSSV ADAAPPPEHG GASVVGRDGS AAAPAAAAGR  120
RKRRRARTVK NREEVESQRM THIAVERNRR KQMNEYLAVL RSLMAASYVQ RGDQASIIGG  180
AINYVKEMEQ LLQSLEAHRH ARRARTDAAA ALPFAGFFTF PQYSMSAVPT TTTTTVSAAA  240
TENGNAVAGA GAGDDADADA SGSKPSSVAD IEVTMVESHA NLKVLSRRRP RQLLRMVAGL  300
QHHRLAVLHL NVASAGHMAL YSLSLKVEDD CQLTSVDDIA AAVHGIVETI EQEQQQQQKQ  360
SCS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	121	125	RKRRR
2	139	150	RMTHIAVERNRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72210.1	6e-65	bHLH family protein

Link Out ? help Back to Top
Ensembl	OGLUM08G19420.1