PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM08G19580.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 630aa MW: 68861.6 Da PI: 7.167

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM08G19580.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12	0.00065	363	385	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp C+k++ +s + Hi +H OGLUM08G19580.1 363 FECPVCNKTYEEQSRYFGHIGSH 385 89***************999777 PP

Sequence ? help Back to Top
Protein Sequence Length: 630 aa Download sequence
METEVFPVVD LRVLTQSDLD ELAAASAHAV DPRSSCPDRA VFNESAGSRK QTFSRVRFVP 60 AAAAAAAAAA ASASAAAAAK LPRGNDKEDS FIAYHLRRLF APDDPSLTEN PSFPQTQTLA 120 RSPSPDPDQL TTNSRGVSVD LVSLSRLADP YDAELGKRTA RMTTEEELMG FISSLEGQWV 180 NQRMRRKLVD ASFFGDHLPS GWRLQLGIER KDRKAWVNCF SYVSPKGQSF ATCQEVSAYL 240 MSLLGYPEFK TDNIEYGSTQ QHGLCADDGV NVLGVQHQIG TSMDSQSNFP VASATFYSHS 300 RDQDETVADD INSYECQQCN LTFHGQSAYA HHLITFHKVS SKRRKSNKVS KFGEPVIGKD 360 GKFECPVCNK TYEEQSRYFG HIGSHAKYQG LTPEAFLQTF SGKVGLSSSL QVLVGSPQLN 420 EKTTACEARS QHHDCSTKHG GNSTREAQST WTYRNNEMNC ADRTVPRTVP QPNDHEDCRV 480 SGFAEATNFN DQAGRHQGFR PFSFGTTNHC QGRIIDHAVA ASKHAEVNNS MKSRDVNLYS 540 RLNTISFPIA TANNETSTAL NDEIAAGPAR MEALFCLCRR GVVSGQETPL VRHSGSGGLA 600 PSGRPPANKA AALLREGQPL WCLSGMEAKL

Sequence ? help Back to Top

Protein Sequence Length: 630 aa Download sequence

METEVFPVVD LRVLTQSDLD ELAAASAHAV DPRSSCPDRA VFNESAGSRK QTFSRVRFVP  60
AAAAAAAAAA ASASAAAAAK LPRGNDKEDS FIAYHLRRLF APDDPSLTEN PSFPQTQTLA  120
RSPSPDPDQL TTNSRGVSVD LVSLSRLADP YDAELGKRTA RMTTEEELMG FISSLEGQWV  180
NQRMRRKLVD ASFFGDHLPS GWRLQLGIER KDRKAWVNCF SYVSPKGQSF ATCQEVSAYL  240
MSLLGYPEFK TDNIEYGSTQ QHGLCADDGV NVLGVQHQIG TSMDSQSNFP VASATFYSHS  300
RDQDETVADD INSYECQQCN LTFHGQSAYA HHLITFHKVS SKRRKSNKVS KFGEPVIGKD  360
GKFECPVCNK TYEEQSRYFG HIGSHAKYQG LTPEAFLQTF SGKVGLSSSL QVLVGSPQLN  420
EKTTACEARS QHHDCSTKHG GNSTREAQST WTYRNNEMNC ADRTVPRTVP QPNDHEDCRV  480
SGFAEATNFN DQAGRHQGFR PFSFGTTNHC QGRIIDHAVA ASKHAEVNNS MKSRDVNLYS  540
RLNTISFPIA TANNETSTAL NDEIAAGPAR MEALFCLCRR GVVSGQETPL VRHSGSGGLA  600
PSGRPPANKA AALLREGQPL WCLSGMEAKL

Link Out ? help Back to Top
Ensembl	OGLUM08G19580.1