PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM08G19590.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 930aa MW: 100193 Da PI: 7.9636

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM08G19590.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.4	0.001	412	434	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp C+k++ +s + Hi +H OGLUM08G19590.1 412 FECPVCNKTYEEQSRYFGHIGSH 434 89***************999777 PP

Sequence ? help Back to Top
Protein Sequence Length: 930 aa Download sequence
MQSPTPLFPS TLLALCPEFD AERRFRPGRH LSATSLTWSA ASINMSSSSS PLHPSLSLSS 60 PSSSSLLRDK AAHRPPTAPD SLSGITLYMA LIDRAVFNES AGSRKQTFSR VRFGAAAAVA 120 ASPSSPSPAA AAKLPRGNDK EDSFIAYHLR RLFAPDDPSS PQTQTLALPA PPSPDPDQLT 180 TNSKGVSVDL VSLSRLADPY DAELGKRTAG MTTEEELMGF ISSLAGQWVS QRMRRKLVDA 240 SFFGDHLPSG WRLQLGIKRK DRKAWVNCFS YVSPKGQSFA TCQEVSAYLM SLLGYPEFKT 300 DNIEYGSTQQ HGLCADDGVN VLGVQHQIGT SMDSQSNFPV ASATFYSHSR DQDETVADDI 360 NSYECQQCNL TFHGQSAYAH HLITFHKVSS KRRKSNKVSK FGEPVIGKDG KFECPVCNKT 420 YEEQSRYFGH IGSHAKYQGL TPEAFLQTFS GKVGNNSFAG LSSSLQVLVG SPQLNEKTTA 480 CEARSQHHDC STKHGGNSTR GIDLFNSNHP ANFNGHNQSW CRSDEIPPTT EAQSTWTYRN 540 NEMNCADRTV PRTVPQPNDH EDCRVSGFAE ATNFNDQAGR HQGFRPFSFG TTNHCQGQII 600 DHAVAASKHA EVNNSMKSRD VNLNSRLNTI SFPIATANNE TSTALNDVNR SCITGKGFSG 660 SFSNNDGAAS IVLPSSGLNN KIPSSLGVAD RSSIAARSFN AGYVNENGAS EANNIGNKNN 720 TMVYQTSLAM RPVSPCDLQL GFSGQKQQIL PGYGELRPAA SGSPQLGGMA ANSSIPTRPS 780 QPQFGSMART DALPTGPSQP GSLARPNFVP TGFSQFASRP PTSVPPADSS QFAGSMARQN 840 IPTTSEPTLV LGYTPQMVNG PPAQLGWDLS LSRMVSEGML PVLCIWCNSQ FHHFGPIDAQ 900 QSGSFGFICP ACKEKMSGNP NAPNNGPWQP

Sequence ? help Back to Top

Protein Sequence Length: 930 aa Download sequence

MQSPTPLFPS TLLALCPEFD AERRFRPGRH LSATSLTWSA ASINMSSSSS PLHPSLSLSS  60
PSSSSLLRDK AAHRPPTAPD SLSGITLYMA LIDRAVFNES AGSRKQTFSR VRFGAAAAVA  120
ASPSSPSPAA AAKLPRGNDK EDSFIAYHLR RLFAPDDPSS PQTQTLALPA PPSPDPDQLT  180
TNSKGVSVDL VSLSRLADPY DAELGKRTAG MTTEEELMGF ISSLAGQWVS QRMRRKLVDA  240
SFFGDHLPSG WRLQLGIKRK DRKAWVNCFS YVSPKGQSFA TCQEVSAYLM SLLGYPEFKT  300
DNIEYGSTQQ HGLCADDGVN VLGVQHQIGT SMDSQSNFPV ASATFYSHSR DQDETVADDI  360
NSYECQQCNL TFHGQSAYAH HLITFHKVSS KRRKSNKVSK FGEPVIGKDG KFECPVCNKT  420
YEEQSRYFGH IGSHAKYQGL TPEAFLQTFS GKVGNNSFAG LSSSLQVLVG SPQLNEKTTA  480
CEARSQHHDC STKHGGNSTR GIDLFNSNHP ANFNGHNQSW CRSDEIPPTT EAQSTWTYRN  540
NEMNCADRTV PRTVPQPNDH EDCRVSGFAE ATNFNDQAGR HQGFRPFSFG TTNHCQGQII  600
DHAVAASKHA EVNNSMKSRD VNLNSRLNTI SFPIATANNE TSTALNDVNR SCITGKGFSG  660
SFSNNDGAAS IVLPSSGLNN KIPSSLGVAD RSSIAARSFN AGYVNENGAS EANNIGNKNN  720
TMVYQTSLAM RPVSPCDLQL GFSGQKQQIL PGYGELRPAA SGSPQLGGMA ANSSIPTRPS  780
QPQFGSMART DALPTGPSQP GSLARPNFVP TGFSQFASRP PTSVPPADSS QFAGSMARQN  840
IPTTSEPTLV LGYTPQMVNG PPAQLGWDLS LSRMVSEGML PVLCIWCNSQ FHHFGPIDAQ  900
QSGSFGFICP ACKEKMSGNP NAPNNGPWQP

Link Out ? help Back to Top
Ensembl	OGLUM08G19590.1