PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM08G20830.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 434aa MW: 46319.8 Da PI: 6.3793

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM08G20830.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.8	4e-05	269	288	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ OGLUM08G20830.1 269 FSCPVCFKTFNRYNNMQMHM 288 89*****************9 PP
2	zf-C2H2	12.5	0.00045	355	375	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C +Cgk F k + ++H +++ OGLUM08G20830.1 355 CRKCGKAFAVKGDWRTHEKNC 375 *****************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 434 aa Download sequence
MEDPYTSFFK NPYYYYCTSA SSFPTAPAAA AAAAAAAHLP PPLPPPYAAL YPTAGGVGVG 60 AHHHHQYPPA AFFHPPLVHQ QHQAPPSPPL REALPLLSLS PTPARRGGVV DAAADSDSDD 120 DDDGDCCYHH LQDQEGAAAG STATPAAAAA RAPLFADLNC IPTCCGDDND GGDPMDVEIA 180 GTTADIDAAV ALRIGLPAGG TEADLLSGLT GAGVEHEEEE EDCKVDGGGS GGDDEVVPLG 240 FSSTPIGKLN KGQYWIPTPS QILIGPTQFS CPVCFKTFNR YNNMQMHMWG HGSQYRKGPE 300 SLRGVQPTAM LRLPCYCCAA GCRNNIDHPR ARPLKDFRTL QTHYKRKHGL KPFLCRKCGK 360 AFAVKGDWRT HEKNCGKLWY CLCGSEFKHK RSLKDHARAF GHAHTALDAD DDDGAVSDAD 420 AVVRPSSSLQ PPPR

Sequence ? help Back to Top

Protein Sequence Length: 434 aa Download sequence

MEDPYTSFFK NPYYYYCTSA SSFPTAPAAA AAAAAAAHLP PPLPPPYAAL YPTAGGVGVG  60
AHHHHQYPPA AFFHPPLVHQ QHQAPPSPPL REALPLLSLS PTPARRGGVV DAAADSDSDD  120
DDDGDCCYHH LQDQEGAAAG STATPAAAAA RAPLFADLNC IPTCCGDDND GGDPMDVEIA  180
GTTADIDAAV ALRIGLPAGG TEADLLSGLT GAGVEHEEEE EDCKVDGGGS GGDDEVVPLG  240
FSSTPIGKLN KGQYWIPTPS QILIGPTQFS CPVCFKTFNR YNNMQMHMWG HGSQYRKGPE  300
SLRGVQPTAM LRLPCYCCAA GCRNNIDHPR ARPLKDFRTL QTHYKRKHGL KPFLCRKCGK  360
AFAVKGDWRT HEKNCGKLWY CLCGSEFKHK RSLKDHARAF GHAHTALDAD DDDGAVSDAD  420
AVVRPSSSLQ PPPR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-109	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OGLUM08G20830.1