PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM08G21000.2
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 399aa    MW: 41576.2 Da    PI: 8.4764
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM08G21000.2genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.13.3e-13330375655
                      HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +++Er RR ri +++ +L+el+P+     +k  + a++L +Av+YIk+Lq
  OGLUM08G21000.2 330 SIAERVRRTRISERIRKLQELVPNM----DKQTNTADMLDLAVDYIKDLQ 375
                      689*********************7....688*****************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    
MYGSPVSKDL NLPVQPPAMS SSGLLRYRSA PSTLLAEFCD DFLPPAAAPR AASPDADNVF  60
SRFLADHQIR DKSPPATATA AAAHFPDDPT MATQHHHQQQ QMMFQHHPQQ MASVEGLYRT  120
VSSTGIDAAT AAAGGGGGGL LRQSSSPAGF LNHLNMDNGY GSMLRAGMAA AAGGGGGVGF  180
RNGANAAAAA DSPGGSGGRL KGQLSFSSRQ GSLMSQISEM GSEELGGSSP EGAGGGGGGG  240
GGRGYLSGYP MSSGWEESSL MSDTNISGVK RQRDSSEPSQ NGGGGGGLAH QFSLPKTSSE  300
MAAIEKFLQF QDAVPCKIRA KRGCATHPRS IAERVRRTRI SERIRKLQEL VPNMDKQTNT  360
ADMLDLAVDY IKDLQKQVKG LNDSRANCTC SAKHQQYSG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.13e-45bHLH family protein