PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM08G21100.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 344aa    MW: 35159.8 Da    PI: 6.1087
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM08G21100.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.70.00079243265123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C++Cg  F +   L  H+r+H
  OGLUM08G21100.1 243 HECSICGAEFASGQALGGHMRRH 265
                      78********************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    
MGVQEEAALA AAVVKGKRSK RQRAHAAAMV PIAASAATAE EESMESSLSL SGGAAAAEGS  60
STTSPLMTTA TTARGDEAVS GCVTEEEEDM ALCLMLLASG GHGERAPDAE AVAAKEAKFR  120
SRRPADGAGA GEFVYECKTC SKCFPSFQAL GGHRTSHKKP RLVALPATTE PAADDKVKPA  180
IPEAAAAAAE EKPPKPSPPR PPASRPIATD PTVLAIPVIP KQEVLDATNA AAIASVSKQP  240
RVHECSICGA EFASGQALGG HMRRHRPLIP ASASSAVVSV LDAVDAPRQK EKSLLELDLN  300
MPAPCDDAAA ETTTSSAATS PAFAFAVSDR SPLLVPAALV GCHY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.11e-30C2H2 family protein