PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM08G21760.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family LBD
Protein Properties Length: 172aa    MW: 19162.6 Da    PI: 4.9646
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM08G21760.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260121.16e-38201191100
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                      +CaaC++lrr+Ca+dCvlap fpa++p+++a+vh++FGasnv +ll++lp  er +a++++++eA +r++dPvyG++g+i++lq++++ ++ el
  OGLUM08G21760.1  20 RCAACRYLRRRCADDCVLAPFFPASRPHRYACVHRVFGASNVARLLQSLPMAERGNAANTMAMEAYWRVQDPVYGCTGIINRLQEEIRAVQCEL 113
                      6********************************************************************************************* PP

           DUF260  95 allkee 100
                      a+++++
  OGLUM08G21760.1 114 ARTQAH 119
                      *99986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    
MQDPEEDDDD QQQQHPAARR CAACRYLRRR CADDCVLAPF FPASRPHRYA CVHRVFGASN  60
VARLLQSLPM AERGNAANTM AMEAYWRVQD PVYGCTGIIN RLQEEIRAVQ CELARTQAHL  120
AIVVASSQQP PPPPPPPPLP SPPPPPQQQQ QEEQSPPPLL DPADEFLNLD GL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26660.11e-31LBD family protein