PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM08G22300.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 395aa    MW: 41180.6 Da    PI: 6.1702
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM08G22300.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.23.5e-09214261455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR+ri +++  L++l+P +    +k   Ka +L + ++Y++sLq
  OGLUM08G22300.1 214 SHSLAERVRRERISQRMKVLQDLVPGC----NKVIGKALMLDEIINYVQSLQ 261
                      8*************************9....677*****************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    
MDGGRVGGDY ISSLLSSSPR LDFGVPVLDA VVAPGGGGGG GDCGLDKLCG DPGFAERAAR  60
LSSFNNGGGG VGQRYGGAGA GLFGMPPPAP GDFAGGGSRE ASSVSDPASS AMKDAAANAK  120
KRKSTAAAAA AAKGKGKEPP VGEEKESDGK RCKTGNGEKE SSVKPKAEQA GSDSSVEDGG  180
GGGQKQGKGK NAKPVEPPKD YVHVRARRGQ ATDSHSLAER VRRERISQRM KVLQDLVPGC  240
NKVIGKALML DEIINYVQSL QRQVEFLSMK LATVNPLDFS NLPTLLQKDM FQACGPSASS  300
VFSLESSNSA FPFAEQGDVF QQFAQNSMES QCTLNQLDLA LSQATNAAQY AFQDGTAGAN  360
LQQRNFWEDD LQSVFHIENG QSQENGVSAP NFHGW
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.32e-53bHLH family protein