PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM08G23120.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

CO-like

Protein Properties

Length: 488aa MW: 51298 Da PI: 5.6114

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM08G23120.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	19.8	1.6e-06	14	55	2	37
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 +++ C+ ++e + l+C+ + lC C + H H OGLUM08G23120.1 14 QQWPCDYCGEAAAALHCRADAARLCVACDRHVHAAnalsrkH 55 7899*****9****************999545555555 PP
2	CCT	43.2	1.4e-15	450	478	16	44
CCT 16 kFeKkirYesRKavAesRpRvKGrFvkqa 44 ++eK+irYesRK +A++R+RvKGrFvk++ OGLUM08G23120.1 450 RYEKHIRYESRKLRADTRKRVKGRFVKSN 478 79************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 488 aa Download sequence
MKDGGGGGGR GQQQQWPCDY CGEAAAALHC RADAARLCVA CDRHVHAANA LSRKHVRAPL 60 CAACAARPAA ARVASASAPA FLCADCDTGC GGDDGAALRV PVEGFSGCPA AAELAASWGL 120 DLPGGCGGEE EEADDAFFSA LDYSMLAVDP VLRDLYVPCD PPEVVVAGGG GRRLKGEALG 180 HQLAEMARRE AETAHPHTQP HSDLSPRTPR RTSAAASGRL QEKQAPPPLP HAAATAAAAA 240 AAQEAPLPYT SLLMMAPANC TELMENDRVG DEDENVLWES TAPSVPPTQI WDFNLGKSRD 300 HNENSALEVG FGSNNGGFMI KSYNDMLKEI SSGTTKDLED IYDSRYCAAA EDIMSTNVCQ 360 LSSKNPSTGS NKRKVSSCAS TIDGPTTSTS HVPAASGALG GSSNDRGSAL PKEISFCDQT 420 VVPTGADQRP CTIKIDSETL AQNRDNAMQR YEKHIRYESR KLRADTRKRV KGRFVKSNGA 480 HDDVSNGG

Sequence ? help Back to Top

Protein Sequence Length: 488 aa Download sequence

MKDGGGGGGR GQQQQWPCDY CGEAAAALHC RADAARLCVA CDRHVHAANA LSRKHVRAPL  60
CAACAARPAA ARVASASAPA FLCADCDTGC GGDDGAALRV PVEGFSGCPA AAELAASWGL  120
DLPGGCGGEE EEADDAFFSA LDYSMLAVDP VLRDLYVPCD PPEVVVAGGG GRRLKGEALG  180
HQLAEMARRE AETAHPHTQP HSDLSPRTPR RTSAAASGRL QEKQAPPPLP HAAATAAAAA  240
AAQEAPLPYT SLLMMAPANC TELMENDRVG DEDENVLWES TAPSVPPTQI WDFNLGKSRD  300
HNENSALEVG FGSNNGGFMI KSYNDMLKEI SSGTTKDLED IYDSRYCAAA EDIMSTNVCQ  360
LSSKNPSTGS NKRKVSSCAS TIDGPTTSTS HVPAASGALG GSSNDRGSAL PKEISFCDQT  420
VVPTGADQRP CTIKIDSETL AQNRDNAMQR YEKHIRYESR KLRADTRKRV KGRFVKSNGA  480
HDDVSNGG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28050.1	3e-18	CO-like family protein

Link Out ? help Back to Top
Ensembl	OGLUM08G23120.1