PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM08G23770.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 236aa    MW: 24456.1 Da    PI: 5.6332
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM08G23770.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.91.4e-194395155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55
                     + ++GVr++ + grWv+e+r+p   g +  r ++g+f+taeeAa+a++aa+++l g
  OGLUM08G23770.1 43 PVFRGVRRRGRAGRWVCEVRVP---GsRGDRLWVGTFDTAEEAARAHDAAMLALCG 95
                     579******************9...5445***********************9976 PP
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    
MEKNTTAMGQ LMSSSATTAA TATGPASPKR PAGRTKFQET RHPVFRGVRR RGRAGRWVCE  60
VRVPGSRGDR LWVGTFDTAE EAARAHDAAM LALCGASASL NFADSAWLLH VPRAPVASGH  120
DQLPDVQRAA SEAVAEFQRR GSTAATATAT SGDAASTAPP SSSPVLSPND DNASSASTPA  180
VAAALDHGDM FGGMRADLYY ASLAQGLLIE PPPPPTTAEG FCDDEGCGGA EMELWS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25470.18e-22ERF family protein