PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM08G23900.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

HSF

Protein Properties

Length: 452aa MW: 48051.8 Da PI: 5.5235

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM08G23900.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	112	4e-35	111	202	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 Fl+k+y++++d++++++isw+++g++fvv+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+k+ ++ weF+++ F++g+++ll+ OGLUM08G23900.1 111 FLTKTYQLVDDPAVDDVISWNDDGSTFVVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANDCFRRGERRLLC 195 9***************************************************************99.........************* PP XXXXXXX CS HSF_DNA-bind 96 kikrkks 102 +i+r+k OGLUM08G23900.1 196 EIHRRKV 202 **986 PP

Sequence ? help Back to Top
Protein Sequence Length: 452 aa Download sequence
MKGSRLAVKE SCLPMTMPMP ETFAQYSNPL RSTRAYGQLC RKQPDTTVYP GQICAAAGGG 60 GGMADQTAAA VVVVGGAAAT MGEPSPPPPA PAAEAAGVGV GQQQRTVPTP FLTKTYQLVD 120 DPAVDDVISW NDDGSTFVVW RPAEFARDLL PKYFKHNNFS SFVRQLNTYG FRKIVPDRWE 180 FANDCFRRGE RRLLCEIHRR KVTPPAPAAT TAAVAAAIPM ALPVTTTRDG SPVLSGEEQV 240 ISSSSSPEPP LVLPQAPSGS GSGGVASGDV GDENERLRRE NAQLARELSQ MRKLCNNILL 300 LMSKYASTQQ LDAANASSAA GNNNNNNCSG ESAEAATPLP LPAVLDLMPS CPGAASAAAP 360 VSDNEEGMMS AKLFGVSIGR KRMRHDGGGD DDHAATVKAE PMDERPHGKD EQSAETQAWP 420 IYRPRPVYQP IRACNGYEYD RAGSDQDGSN ST

Sequence ? help Back to Top

Protein Sequence Length: 452 aa Download sequence

MKGSRLAVKE SCLPMTMPMP ETFAQYSNPL RSTRAYGQLC RKQPDTTVYP GQICAAAGGG  60
GGMADQTAAA VVVVGGAAAT MGEPSPPPPA PAAEAAGVGV GQQQRTVPTP FLTKTYQLVD  120
DPAVDDVISW NDDGSTFVVW RPAEFARDLL PKYFKHNNFS SFVRQLNTYG FRKIVPDRWE  180
FANDCFRRGE RRLLCEIHRR KVTPPAPAAT TAAVAAAIPM ALPVTTTRDG SPVLSGEEQV  240
ISSSSSPEPP LVLPQAPSGS GSGGVASGDV GDENERLRRE NAQLARELSQ MRKLCNNILL  300
LMSKYASTQQ LDAANASSAA GNNNNNNCSG ESAEAATPLP LPAVLDLMPS CPGAASAAAP  360
VSDNEEGMMS AKLFGVSIGR KRMRHDGGGD DDHAATVKAE PMDERPHGKD EQSAETQAWP  420
IYRPRPVYQP IRACNGYEYD RAGSDQDGSN ST

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62020.1	4e-61	HSF family protein

Link Out ? help Back to Top
Ensembl	OGLUM08G23900.1