PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM08G24590.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 525aa MW: 54634.9 Da PI: 8.8044

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM08G24590.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.4	1.2e-05	23	45	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k F r nL+ H r H OGLUM08G24590.1 23 FVCEVCNKGFQREQNLQLHRRGH 45 89*******************88 PP
2	zf-C2H2	13.3	0.00026	99	121	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +t+ OGLUM08G24590.1 99 WKCDKCNKRYAVQSDWKAHSKTC 121 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 525 aa Download sequence
MYVDPDAEVV ALSPHTLLAT NRFVCEVCNK GFQREQNLQL HRRGHNLPWK LKQKNPKETR 60 RRVYLCPEPS CVHHDPSRAL GDLTGIKKHY SRKHGEKKWK CDKCNKRYAV QSDWKAHSKT 120 CGTREYRCDC GTLFSRYSLC TTPSVSKYKS SSSSFCCESY SLPRDSFITH RAFCDALAQE 180 SGRIMPPMGA ALYAAAGAGM AIGGLTGMAA SHQLQPFQDH SSAITTAANA AAQFDHLMAT 240 SSAAAGSPAF RAAQPTSSSS SPFYLGGGGD DGQAHTSLLH GKPAFHGLMQ LPEQQGSNGG 300 GLLNLSYFSG GNGGHHHHHQ EGRLVFPDQF NGVAAGNGAR AGSGEHGNSG NNADSGSIFS 360 GNMMGGGGGF SSLYSSSDQT VPPPQMSATA LLQKAAQMGA TTSSGGAGSV NSLLRGLGSG 420 GALNGKPAGA AGFIMSGESS SRSTASQTAE NESQLRELMM NTLSATGGGT GAGTVFVRGG 480 FPGVDDGKLS TRDFLGVSGG APGLQLRHGG AAGMGMAGSL DQEMK

Sequence ? help Back to Top

Protein Sequence Length: 525 aa Download sequence

MYVDPDAEVV ALSPHTLLAT NRFVCEVCNK GFQREQNLQL HRRGHNLPWK LKQKNPKETR  60
RRVYLCPEPS CVHHDPSRAL GDLTGIKKHY SRKHGEKKWK CDKCNKRYAV QSDWKAHSKT  120
CGTREYRCDC GTLFSRYSLC TTPSVSKYKS SSSSFCCESY SLPRDSFITH RAFCDALAQE  180
SGRIMPPMGA ALYAAAGAGM AIGGLTGMAA SHQLQPFQDH SSAITTAANA AAQFDHLMAT  240
SSAAAGSPAF RAAQPTSSSS SPFYLGGGGD DGQAHTSLLH GKPAFHGLMQ LPEQQGSNGG  300
GLLNLSYFSG GNGGHHHHHQ EGRLVFPDQF NGVAAGNGAR AGSGEHGNSG NNADSGSIFS  360
GNMMGGGGGF SSLYSSSDQT VPPPQMSATA LLQKAAQMGA TTSSGGAGSV NSLLRGLGSG  420
GALNGKPAGA AGFIMSGESS SRSTASQTAE NESQLRELMM NTLSATGGGT GAGTVFVRGG  480
FPGVDDGKLS TRDFLGVSGG APGLQLRHGG AAGMGMAGSL DQEMK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02070.1	5e-96	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OGLUM08G24590.1