PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM08G24590.2

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 498aa MW: 51710.6 Da PI: 8.9678

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM08G24590.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.5	1.2e-05	23	45	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k F r nL+ H r H OGLUM08G24590.2 23 FVCEVCNKGFQREQNLQLHRRGH 45 89*******************88 PP
2	zf-C2H2	13.3	0.00024	99	121	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +t+ OGLUM08G24590.2 99 WKCDKCNKRYAVQSDWKAHSKTC 121 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 498 aa Download sequence
MYVDPDAEVV ALSPHTLLAT NRFVCEVCNK GFQREQNLQL HRRGHNLPWK LKQKNPKETR 60 RRVYLCPEPS CVHHDPSRAL GDLTGIKKHY SRKHGEKKWK CDKCNKRYAV QSDWKAHSKT 120 CGTREYRCDC GTLFSRRDSF ITHRAFCDAL AQESGRIMPP MGAALYAAAG AGMAIGGLTG 180 MAASHQLQPF QDHSSAITTA ANAAAQFDHL MATSSAAAGS PAFRAAQPTS SSSSPFYLGG 240 GGDDGQAHTS LLHGKPAFHG LMQLPEQQGS NGGGLLNLSY FSGGNGGHHH HHQEGRLVFP 300 DQFNGVAAGN GARAGSGEHG NSGNNADSGS IFSGNMMGGG GGFSSLYSSS DQTVPPPQMS 360 ATALLQKAAQ MGATTSSGGA GSVNSLLRGL GSGGALNGKP AGAAGFIMSG ESSSRSTASQ 420 TAENESQLRE LMMNTLSATG GGTGAGTVFV RGGFPGVDDG KLSTRDFLGV SGGAPGLQLR 480 HGGAAGMGMA GSLDQEMK

Sequence ? help Back to Top

Protein Sequence Length: 498 aa Download sequence

MYVDPDAEVV ALSPHTLLAT NRFVCEVCNK GFQREQNLQL HRRGHNLPWK LKQKNPKETR  60
RRVYLCPEPS CVHHDPSRAL GDLTGIKKHY SRKHGEKKWK CDKCNKRYAV QSDWKAHSKT  120
CGTREYRCDC GTLFSRRDSF ITHRAFCDAL AQESGRIMPP MGAALYAAAG AGMAIGGLTG  180
MAASHQLQPF QDHSSAITTA ANAAAQFDHL MATSSAAAGS PAFRAAQPTS SSSSPFYLGG  240
GGDDGQAHTS LLHGKPAFHG LMQLPEQQGS NGGGLLNLSY FSGGNGGHHH HHQEGRLVFP  300
DQFNGVAAGN GARAGSGEHG NSGNNADSGS IFSGNMMGGG GGFSSLYSSS DQTVPPPQMS  360
ATALLQKAAQ MGATTSSGGA GSVNSLLRGL GSGGALNGKP AGAAGFIMSG ESSSRSTASQ  420
TAENESQLRE LMMNTLSATG GGTGAGTVFV RGGFPGVDDG KLSTRDFLGV SGGAPGLQLR  480
HGGAAGMGMA GSLDQEMK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02070.1	1e-102	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OGLUM08G24590.2