PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM08G24740.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 160aa MW: 16713.6 Da PI: 9.5308

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM08G24740.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.2	0.00013	59	81	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C ++F ++ L H++ H OGLUM08G24740.1 59 FSCTYCRRRFYSSQALGGHQNAH 81 89******************988 PP

Sequence ? help Back to Top
Protein Sequence Length: 160 aa Download sequence
MEKEIISARS TTTTTTTAAA GDVNLDLRLV HSTAAGRQHT AATRNPAPPL AAAGDDRAFS 60 CTYCRRRFYS SQALGGHQNA HKLERSLAKR SRELSAGVTT AAPPPPPHPE LGWPYPPQGG 120 GGAAAAVVSW IADGGRRYGY RVHAAAAGGD ADDIDLSLKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57520.1	1e-18	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OGLUM08G24740.1