PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM08G25240.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 656aa MW: 71745.5 Da PI: 4.37

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM08G25240.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	170.9	4e-53	21	148	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 l+pGfrFhPtdeelv++yLk+kv+g++l++ ++i+evd+ykvePwdLp+ ++++++++wyfFs+ d+k+a+ r+nrat+ gyWk+tgkd+ev OGLUM08G25240.1 21 LAPGFRFHPTDEELVSYYLKRKVHGRPLKV-DAIAEVDLYKVEPWDLPArsRLRSRDSQWYFFSRLDRKHANRARTNRATAGGYWKTTGKDREV 113 579*************************.99***********4357888999********************************** PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 + + ++vg+kktLvf+ grapkge+t+Wvmheyrl OGLUM08G25240.1 114 RN-GPTTVGMKKTLVFHAGRAPKGERTNWVMHEYRL 148 9.999***************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 656 aa Download sequence
MSHPSSSSSS APPAAAEATS LAPGFRFHPT DEELVSYYLK RKVHGRPLKV DAIAEVDLYK 60 VEPWDLPARS RLRSRDSQWY FFSRLDRKHA NRARTNRATA GGYWKTTGKD REVRNGPTTV 120 GMKKTLVFHA GRAPKGERTN WVMHEYRLDG QTTIPPQDSF VVCRIFQKAG PGPQNGAQYG 180 APFVEEEWEE DDEDVGLLPV EEKDNSDDQE KEISGAMEKG YLQMSDLVQN LGDQNENGTI 240 ALPVSDNSNN SNHSEDVDGN SGDILSDQNL GSNFLHHAEP VEQNGLVLNE NMFSSANAGD 300 LFNISSPNDG FLELKDFAGI ADLENPLANE STIWPSDGWP WKSTDSMEAV NGASNEFSPL 360 AGEQIFQPEE LEQLLQSLQE DSHMGSTISD PPHSSITNLA KPEEDCLMFY DAPFDSSMCD 420 DGFRQLNGFL GSPSTNLSGI DMVDDGMPYY DAMDDNLFND LLSSVQPSAG SSSHAFSGPV 480 LTQEVNNTTY TYSPTQKVLE PNLVVGAPSS ARLPEAGSQL NYVVLPDSQT KSSLIGKRFV 540 KILDSISAPP AFAAAEFPAS LRKSLAPISG AHHNTIRVSA EVISIGSLTP ASQDKWSLEK 600 DEGMELLFSA GFEPDTRVHF GCNTITAVLR GGFCLFFFSA IMLLVSYEVG MCIYGK

Sequence ? help Back to Top

Protein Sequence Length: 656 aa Download sequence

MSHPSSSSSS APPAAAEATS LAPGFRFHPT DEELVSYYLK RKVHGRPLKV DAIAEVDLYK  60
VEPWDLPARS RLRSRDSQWY FFSRLDRKHA NRARTNRATA GGYWKTTGKD REVRNGPTTV  120
GMKKTLVFHA GRAPKGERTN WVMHEYRLDG QTTIPPQDSF VVCRIFQKAG PGPQNGAQYG  180
APFVEEEWEE DDEDVGLLPV EEKDNSDDQE KEISGAMEKG YLQMSDLVQN LGDQNENGTI  240
ALPVSDNSNN SNHSEDVDGN SGDILSDQNL GSNFLHHAEP VEQNGLVLNE NMFSSANAGD  300
LFNISSPNDG FLELKDFAGI ADLENPLANE STIWPSDGWP WKSTDSMEAV NGASNEFSPL  360
AGEQIFQPEE LEQLLQSLQE DSHMGSTISD PPHSSITNLA KPEEDCLMFY DAPFDSSMCD  420
DGFRQLNGFL GSPSTNLSGI DMVDDGMPYY DAMDDNLFND LLSSVQPSAG SSSHAFSGPV  480
LTQEVNNTTY TYSPTQKVLE PNLVVGAPSS ARLPEAGSQL NYVVLPDSQT KSSLIGKRFV  540
KILDSISAPP AFAAAEFPAS LRKSLAPISG AHHNTIRVSA EVISIGSLTP ASQDKWSLEK  600
DEGMELLFSA GFEPDTRVHF GCNTITAVLR GGFCLFFFSA IMLLVSYEVG MCIYGK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10500.1	1e-72	NAC family protein

Link Out ? help Back to Top
Ensembl	OGLUM08G25240.1