PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM08G25340.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family LBD
Protein Properties Length: 215aa    MW: 23239.2 Da    PI: 6.2822
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM08G25340.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601223.2e-3871071100
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                      +C aCk+lrrkC+k+Cv+apyf++eq +++fa++hk+FGasn +k+l +lp ++r +a+ ++ yeA+ar+rdP+yG+v++i++lqqq+ +l+a+
  OGLUM08G25340.1   7 PCGACKFLRRKCVKGCVFAPYFCHEQgAAHFAAIHKVFGASNASKILMHLPVSDRCEAAVTMSYEAQARLRDPIYGCVAHIFSLQQQVVSLQAQ 100
                      7*************************89****************************************************************** PP

           DUF260  94 lallkee 100
                      l++lk++
  OGLUM08G25340.1 101 LESLKAQ 107
                      **99987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    
MTGLGSPCGA CKFLRRKCVK GCVFAPYFCH EQGAAHFAAI HKVFGASNAS KILMHLPVSD  60
RCEAAVTMSY EAQARLRDPI YGCVAHIFSL QQQVVSLQAQ LESLKAQATQ GYGDGCSISS  120
PQNDSCGNML TSIVQDEQQF VGPTMASNSS VKNENHSYIA NGHLAPMSAQ SSQGFEAELC  180
MAEYSNTNPC CSVQGNWYHD MEDLQSVAFA YLNQA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58190.12e-54LBD family protein