PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM08G25360.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 144aa    MW: 15940.3 Da    PI: 9.4312
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM08G25360.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.41.1e-202072156
              AP2  1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56
                     ++y+GVr+++ +g+++AeIrd      ++ r++lg+f+taeeAa+a+++a+ +++g+
  OGLUM08G25360.1 20 TKYRGVRRRP-SGKFAAEIRDS---SrQSVRVWLGTFDTAEEAARAYDRAAYAMRGH 72
                     69********.7*********3...2236**************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    
MDGGGGGGWD DQGNGGGETT KYRGVRRRPS GKFAAEIRDS SRQSVRVWLG TFDTAEEAAR  60
AYDRAAYAMR GHLAVLNFPA EARNYVRGSG SSSSSRQQQQ QQQHQHQQRQ VIVLECLDDQ  120
VLQEMLKGGD DQYRSAAGSK RNNY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04370.12e-21ERF family protein