PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM09G01090.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 178aa    MW: 19334.1 Da    PI: 4.546
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM09G01090.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF37.82.5e-12242444
                     -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
           SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                     e++  r+v fskRr+ ++K A+ELSv  +a+va ++fs+ g
  OGLUM09G01090.1  2 ESEEARKVCFSKRRADLFKMASELSVHFNADVAAVVFSPAG 42
                     78889**********************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    
MESEEARKVC FSKRRADLFK MASELSVHFN ADVAAVVFSP AGNRAYSIGD PSVMDRFLSS  60
LPAPAPPAET EPEPEVDWSV MEELSRQCGQ LQAMVDAHKA RLEKAEEKLR ESGAAAWMMD  120
LEAEVGRMAP EDVLALVTKL AVLRDGVAER AHEMLREALL AVAAPTPTTP TTPLPAGF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.11e-13M-type_MADS family protein