PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM09G04680.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 235aa    MW: 26376 Da    PI: 8.8587
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM09G04680.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.52.9e-17114161354
              AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54 
                      y+G+r+++ +grW++eIrdp+    +  r++lg+f+tae+Aa+a++   ++++
  OGLUM09G04680.1 114 YRGIRQRP-WGRWASEIRDPV----KgIRVWLGTFDTAEGAARAYDDEVRRIY 161
                      9*******.**********75....44*******************8777766 PP
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    
MRRRVSSSSS SSSSSSPARH HKVRRSRRKL AVDEDWEAAF REFLSRDHDD DDHDHDGQHV  60
VVAPLIRGSD KCVHGHEVVA STVGGGASGG RRRADDDDGE RRRRRRREKR SYPYRGIRQR  120
PWGRWASEIR DPVKGIRVWL GTFDTAEGAA RAYDDEVRRI YGGNAKTNFP PSPPTPPPPP  180
PPEKPAAERS PSTTPPTTTE DSGDSRILIE CCSDDLMDSL LAAFDMTTGD MRFWS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
191107RRRADDDDGERRRRRRR
2100108ERRRRRRRE
3101106RRRRRR
4101107RRRRRRR
5101108RRRRRRRE
6101109RRRRRRREK
7102107RRRRRR
8102110RRRRRREKR
9102108RRRRRRR
10102110RRRRRRREK
11103111RRRRRRREK
12104112RRRRRRREK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.12e-25ERF family protein