PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM09G04690.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 254aa    MW: 27661.6 Da    PI: 4.6213
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM09G04690.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2636.6e-20102151356
              AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                      y+GVr+++ +grW++eIrdp+    + +r++lg+f+ta eAa+a++a +++++g+
  OGLUM09G04690.1 102 YRGVRQRP-WGRWASEIRDPV----KgARVWLGTFDTAVEAARAYDAEARRIHGH 151
                      9*******.**********75....44**************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    
MCGGALIPND YGDKPPPPPS ESSEWDATTK MKKKKKRGGG GDDDWEAAFR EFIAGDDDDD  60
DGGVSMFPSG AGTMETTTEV APAVAVVERP RRRRRVRRSY PYRGVRQRPW GRWASEIRDP  120
VKGARVWLGT FDTAVEAARA YDAEARRIHG HKARTNFPPD EPPLPAPSQA PFCFLLDDDD  180
DDGVARGNSP ASSSAPDSAS ACTTSSTVAS GERGDELILL ECCSDDVMDS LLAGFDVSSE  240
PRSVLVWFLQ FFVK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18997RPRRRRRVR
29198RRRRRVRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33710.17e-19ERF family protein