PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM09G05550.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 385aa MW: 40162.2 Da PI: 7.6722

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM09G05550.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.9	3.6e-05	188	207	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++C C+k+F+r n++ H+ OGLUM09G05550.1 188 FSCAVCNKTFNRFNNMQMHM 207 89*****************9 PP
2	zf-C2H2	13.6	0.0002	279	301	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C Cgk+F + + ++H +++ OGLUM09G05550.1 279 YACRRCGKRFAVRGDWRTHEKNC 301 89*****************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 385 aa Download sequence
MHPHLYQSHH HHQHVAPPTK HGGGAGGEED DQSMLLLSLW PPGHSSHHHQ HHHHGAASSS 60 ACSSASISAA AVAAAHSGGG GGGHGVAAAA SSWFNPSHYH GGGGGGGGFL FQEQQEPNVS 120 ISLSIAPPCG VSGGNAAAMA AAGSFATSPL PQQPVASSAV ATAAGGGQAP SQYWIPSAAE 180 ILVGSTQFSC AVCNKTFNRF NNMQMHMWGH GSQYRKGSES LRGAITVGGA APPASLMRLP 240 CYCCAEGCRN NVEHPRARPL KDFRTLQTHY RRKHGARPYA CRRCGKRFAV RGDWRTHEKN 300 CGKLWFCVCG SDFKHKRSLK DHVRSFGGGH APHIVESSST GAGGGGGCGG AGADDDDDEY 360 YDDDDDTVSL SRATSAHDDA DMIVV

Sequence ? help Back to Top

Protein Sequence Length: 385 aa Download sequence

MHPHLYQSHH HHQHVAPPTK HGGGAGGEED DQSMLLLSLW PPGHSSHHHQ HHHHGAASSS  60
ACSSASISAA AVAAAHSGGG GGGHGVAAAA SSWFNPSHYH GGGGGGGGFL FQEQQEPNVS  120
ISLSIAPPCG VSGGNAAAMA AAGSFATSPL PQQPVASSAV ATAAGGGQAP SQYWIPSAAE  180
ILVGSTQFSC AVCNKTFNRF NNMQMHMWGH GSQYRKGSES LRGAITVGGA APPASLMRLP  240
CYCCAEGCRN NVEHPRARPL KDFRTLQTHY RRKHGARPYA CRRCGKRFAV RGDWRTHEKN  300
CGKLWFCVCG SDFKHKRSLK DHVRSFGGGH APHIVESSST GAGGGGGCGG AGADDDDDEY  360
YDDDDDTVSL SRATSAHDDA DMIVV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13290.1	8e-96	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OGLUM09G05550.1