PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM09G08000.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 878aa MW: 101060 Da PI: 7.3968

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM09G08000.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.6	2.3e-05	727	749	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k F r nL+ H r H OGLUM09G08000.1 727 FVCEVCNKGFQREQNLQLHRRGH 749 89*******************88 PP
2	zf-C2H2	11.9	0.00067	756	778	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +++ OGLUM09G08000.1 756 WKCDNCSKRYAVQSDWKAHAKNC 778 58*****************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 878 aa Download sequence
MDLFLSATSL VSNANEWFQF LGTAFPAASE LLSRWRRRPE RRRREDEEAE RRQLQWKELD 60 TKMKQLHCCM FDLPDLIHHA EWFSFVKGDR EVANLLPELK ARVHDAYDLL EEFNHHHQLL 120 RLDPDAAAAG DDFLQSVVSG NTVREILVGF NYLRNTLGGI IDRRAHRSEP MQIGKLLRPA 180 MSPFYDRSKV RSLENEVNEV LELLGVKICS ARPHKRRIEE GETSSASKRN RRNSGTPSAS 240 TGASCRNQEI TSDNVTVLAI SGIGGVGKTT LARQVYNDER VKGYFDLRIW ISVSDDFDVK 300 RLTKELIEFA LANWMQSDNL CNLQQSLTES IVKFRFLLVL DDVWDDVYAN QDNRWQNFLE 360 PLKSAQQGSA ILLTTRSQRV ADVVNENRHF RLEGLPPTIF DEFFEACAFG TDHCRVHPEL 420 NPIGKMIIPQ LKRCPLAAET LGRFLKPMLD KEYWNQIAGK ELWELKQEKY DILPVLRLSY 480 LYLPSHLRNC FLFCSMYPKC HRFDKDILVS SWIAAGLVEF CKGGEIERDG YQYFEELLHR 540 SLLQEDTRNP TDSMYVMHEL IHDMAQLVSE HECFIVKGET DLSKIPQGVR HLSIIGSSAL 600 NEANLRTVCE YKGLRSIVCH GVESYTLTAA AKYWFEELTK IRMLGFLSCK LNSIPETIGN 660 LKLLRYLNIS ECTFDELPPS FWHLRNLQIV DAQKCRVQHI PEDFHQLDPD AEVIALSPKT 720 LLATNRFVCE VCNKGFQREQ NLQLHRRGHN LPWKKWKCDN CSKRYAVQSD WKAHAKNCGT 780 REYRCDCGTL FSRRDSFITH RALCDLYDST STDNLELSLS TVGSHLTKGC RLGIWGQCIS 840 RLGIEKRSYA HGPPSILALE CEIQRTGALN PFKSRLCL

Sequence ? help Back to Top

Protein Sequence Length: 878 aa Download sequence

MDLFLSATSL VSNANEWFQF LGTAFPAASE LLSRWRRRPE RRRREDEEAE RRQLQWKELD  60
TKMKQLHCCM FDLPDLIHHA EWFSFVKGDR EVANLLPELK ARVHDAYDLL EEFNHHHQLL  120
RLDPDAAAAG DDFLQSVVSG NTVREILVGF NYLRNTLGGI IDRRAHRSEP MQIGKLLRPA  180
MSPFYDRSKV RSLENEVNEV LELLGVKICS ARPHKRRIEE GETSSASKRN RRNSGTPSAS  240
TGASCRNQEI TSDNVTVLAI SGIGGVGKTT LARQVYNDER VKGYFDLRIW ISVSDDFDVK  300
RLTKELIEFA LANWMQSDNL CNLQQSLTES IVKFRFLLVL DDVWDDVYAN QDNRWQNFLE  360
PLKSAQQGSA ILLTTRSQRV ADVVNENRHF RLEGLPPTIF DEFFEACAFG TDHCRVHPEL  420
NPIGKMIIPQ LKRCPLAAET LGRFLKPMLD KEYWNQIAGK ELWELKQEKY DILPVLRLSY  480
LYLPSHLRNC FLFCSMYPKC HRFDKDILVS SWIAAGLVEF CKGGEIERDG YQYFEELLHR  540
SLLQEDTRNP TDSMYVMHEL IHDMAQLVSE HECFIVKGET DLSKIPQGVR HLSIIGSSAL  600
NEANLRTVCE YKGLRSIVCH GVESYTLTAA AKYWFEELTK IRMLGFLSCK LNSIPETIGN  660
LKLLRYLNIS ECTFDELPPS FWHLRNLQIV DAQKCRVQHI PEDFHQLDPD AEVIALSPKT  720
LLATNRFVCE VCNKGFQREQ NLQLHRRGHN LPWKKWKCDN CSKRYAVQSD WKAHAKNCGT  780
REYRCDCGTL FSRRDSFITH RALCDLYDST STDNLELSLS TVGSHLTKGC RLGIWGQCIS  840
RLGIEKRSYA HGPPSILALE CEIQRTGALN PFKSRLCL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	37	44	RRPERRRR
2	40	45	ERRRRE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14580.1	7e-54	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OGLUM09G08000.1