PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM09G10300.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TCP
Protein Properties Length: 235aa    MW: 25214.8 Da    PI: 6.5143
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM09G10300.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP117.22.1e-3671151383
              TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssas 83 
                       ++drhski T++g RdRR+Rls+++a+ fF+Lqd+LGfdk+skt++WLl+q+kpai+ l+ ++sss++++  +++ ssa+
  OGLUM09G10300.1  71 FRTDRHSKIRTAQGVRDRRMRLSLDVARDFFALQDRLGFDKASKTVDWLLTQSKPAIDRLAADTSSSSHRAAGDTRMSSAE 151
                      689************************************************************888886663333333333 PP
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    
MQQQLDQQQH QYDHFFSGHG QFNSETLEAV LCRPPRGAAA DPAVPAAAAA AVLTAARNGG  60
GGHGRARKRP FRTDRHSKIR TAQGVRDRRM RLSLDVARDF FALQDRLGFD KASKTVDWLL  120
TQSKPAIDRL AADTSSSSHR AAGDTRMSSA ERGGDHHMVA VGAAGSGKGD ADKARGPRGG  180
RSAPMELGCE LGRLVPAPVL GEYYYELAEM MSNNTGGEGD DDGDYDDDGD FLDVT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18550.12e-28TCP family protein