PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM09G11590.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 410aa    MW: 44194.5 Da    PI: 7.0784
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM09G11590.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.41.4e-12102144246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g +T++Ed l+  +    G++ W+tIa+ ++ gRt++++k++w++
  OGLUM09G11590.1 102 GGFTEDEDRLICSLYIAIGSR-WATIAAQLP-GRTDNDIKNYWNS 144
                      569******************.*********.***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    
MGRAPCCDKA TVKKGPWAPE EDAALRAYVD AHGTGGNWIA LPHKIGTCRA RRRRLEMTVL  60
MSIWLIAHRP ELVVVVYAGL NRCGKSCRLR WLNYLRPNIR HGGFTEDEDR LICSLYIAIG  120
SRWATIAAQL PGRTDNDIKN YWNSKLKRRL LGGGRRPRGA PPRLVLSGPG PAVTAATSRN  180
AMAASAIERM QLSVRLRRLE AAAPPPPQPF TFYGSNNLAA PPWQPPISPA ASGSSEMPRR  240
LHHHHPSGAA ATSSYSGLIS SWSSSRSHII HDAWLDASST PPLSTTSMGD AATTTTTTAG  300
GESSSSTPTV STATTPFIGG SIDMEDEIDM LLQQIRCFDE NGDDGDDDND QRLIVGDEAA  360
AGAENYLRAL IDEAAENGGD VGVGSWSSCS TPGVDSVFHE YAQLDYGQYN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.13e-63MYB family protein