PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM09G11630.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 129aa    MW: 14109.3 Da    PI: 6.5251
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM09G11630.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.5e-053658123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C++C+k F ++  L  H++ H
  OGLUM09G11630.1 36 FTCTYCDKKFYSSQALGGHQNAH 58
                     89******************988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 129 aa     Download sequence    
MDRYNGGGGG GEEGDEQLDL NLSLQPSQAN EPPGYFTCTY CDKKFYSSQA LGGHQNAHKF  60
ERSVAKRTRE LAAARRQQAA DEEARRGAGT TTTREPTGNA SSSYQRASPP AEARRRDLLT  120
DDIDLSLKL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57520.14e-15C2H2 family protein