PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM09G12720.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 502aa MW: 53257.9 Da PI: 8.6387

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM09G12720.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.4	6e-06	66	88	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F r nL+ H r+H OGLUM09G12720.1 66 YVCEICNQGFQRDQNLQMHRRRH 88 9*********************9 PP
2	zf-C2H2	11.6	0.00085	145	166	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C C+k + +s++k H++t+ OGLUM09G12720.1 145 ACARCSKAYAVHSDYKAHLKTC 166 6*******************98 PP
3	zf-C2H2	10.7	0.0016	174	192	5	23
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 dCg++Fsr +++ H+ t+ OGLUM09G12720.1 174 DCGRVFSRVESFIEHQDTC 192 9***************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 502 aa Download sequence
MLGSCAPTTA GPPPDEATTP EPFRSLQIAT ASAGSAKKKR RPAGTPDPDA EVVSLSPRTL 60 LESDRYVCEI CNQGFQRDQN LQMHRRRHKV PWKLLKREAG EAARKRVFVC PEPTCLHHDP 120 SHALGDLVGI KKHFRRKHSG HRQWACARCS KAYAVHSDYK AHLKTCGTRG HSCDCGRVFS 180 RVESFIEHQD TCNASRGQAA AVAEGGNVST AACGGVAVLE QEKQLDLQAP AAASLSRTAS 240 STSPSSDVVA SPVAWPGAGA PAMPSPKAVA FRGRFDMAPS PPPPSYDHYR GGAGAHNLEL 300 QLMPPFNAGG AAAAPGGMGA CFYAAAHHPT GVSQGNDAST QLQLSIGRGE VMGAAGTSDE 360 ASAAATAKEQ AREQLRQAMA EKEAAGEARA QARRQVELAE QELATARRMR HQAQVELNRA 420 HALRDHAVRQ VNATLLQITC FSCRHKFRAA AAGAPLPAAM SSDVACSYVS SVVTEGGDAD 480 EPLDVVDATR RRLQHANSMG IM

Sequence ? help Back to Top

Protein Sequence Length: 502 aa Download sequence

MLGSCAPTTA GPPPDEATTP EPFRSLQIAT ASAGSAKKKR RPAGTPDPDA EVVSLSPRTL  60
LESDRYVCEI CNQGFQRDQN LQMHRRRHKV PWKLLKREAG EAARKRVFVC PEPTCLHHDP  120
SHALGDLVGI KKHFRRKHSG HRQWACARCS KAYAVHSDYK AHLKTCGTRG HSCDCGRVFS  180
RVESFIEHQD TCNASRGQAA AVAEGGNVST AACGGVAVLE QEKQLDLQAP AAASLSRTAS  240
STSPSSDVVA SPVAWPGAGA PAMPSPKAVA FRGRFDMAPS PPPPSYDHYR GGAGAHNLEL  300
QLMPPFNAGG AAAAPGGMGA CFYAAAHHPT GVSQGNDAST QLQLSIGRGE VMGAAGTSDE  360
ASAAATAKEQ AREQLRQAMA EKEAAGEARA QARRQVELAE QELATARRMR HQAQVELNRA  420
HALRDHAVRQ VNATLLQITC FSCRHKFRAA AAGAPLPAAM SSDVACSYVS SVVTEGGDAD  480
EPLDVVDATR RRLQHANSMG IM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	37	41	KKKRR
2	37	42	KKKRRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68130.1	1e-107	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OGLUM09G12720.1