PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM09G13640.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 217aa    MW: 23156.2 Da    PI: 6.5398
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM09G13640.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.72.8e-152978254
                     HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                     rr+h+e+Er+RR+riN  +++Lr l+P+a   p  +++Ka+ L ++++Y+++L
  OGLUM09G13640.1 29 RRSHSEAERKRRERINAHLDTLRGLVPSA---PRVRMDKAALLGEVMRYVRKL 78
                     99***************************...*******************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    
MVAARSGDDA ELGLDVECLA AAPRWTRARR SHSEAERKRR ERINAHLDTL RGLVPSAPRV  60
RMDKAALLGE VMRYVRKLRS EAAGSAAVVP GEGDEVVVEE EEVEVEGCSC DAGERQAARR  120
VKASVCCADR PGIMSELGDA ERSVSARAVR AEIATVGGRT RSVLELDVAR TAAAGGGSNG  180
ASQLPALQAA LRAVIMSQEE LLAVEGYKQR RFSADFA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13641ERKRRE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56770.11e-15bHLH family protein