PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM09G14350.2

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 907aa MW: 97644.5 Da PI: 8.0923

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM09G14350.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.4	3e-09	736	784	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + sk Ka +L + ++Y++sLq OGLUM09G14350.2 736 NSHSLAERLRREKISERMKLLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 784 58***********************9....556***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 907 aa Download sequence
MPPPTVPFFL TSTTLAAAAA KPQRPGPPSP PAQQQQPREA RDGSRDACAS YTARMRLNPQ 60 LALRLFDHLL RSGADPDHVA YALALGRCAR GRDRRAAAQL HAHAAKRGAA SHRRVCNGLI 120 HAYAVCGSLL DARKVFDRGH EGDAVAWNSL LRGYAAAGDV NALREFFVGM QARDTVSWNT 180 IIAWCVENGE YEEAIAVFRE MLASMECLPD RVTLAEKMIQ MMPMKPDAAV WKALVGACKT 240 HRNFELGRKA GHMLIEAAPN DHAGSIEIDG VIHEFISGDK SHSSKEDIYE MLSEMCQQLK 300 VAGYVPDTSH VLLDIDDEDV KESSLALHSE KLAIAFGLIS TAPGTPIRIA KNLRVCGDCH 360 NAVKLLSKIY GRCIIVRDAN RFHHFREGSC SCGDFWNPLL LLAPDGPLPT GAGRSTGKCL 420 VSRPASAAVH NTGKRRACPV FSKGATNEKK RRAGRDRRQA LLKERKLGIR SLEPRLGDSM 480 DMSESSEKGM ESNASSGPGN GIPVEWQSQF SSAFACQPSV AAQHQQHAMM DSFAAASAGL 540 WASSDVVSAM SSAAPPRGAG FLAPVPGFLQ QGLGHFPVDS GFIERAARST CFGGGMMAGG 600 PYGAADQAMG DAFGGTAEGL MDHHRNVGND KAEEFAGNGH DEVPSSEVAG GDCFSKGSDS 660 KKRRRPNEVM GTDQVHSSNL PSDSANESVH SKDKGEESSP ATTNGGKSKG KGAKETSESQ 720 KEEYIHVRAR RGQATNSHSL AERLRREKIS ERMKLLQDLV PGCSKVTGKA VMLDEIINYV 780 QSLQRQVEFL SMKLATVNPR LDLNIEGLLS KDLLRFPGVP SSSIGFSPEM MHPQLQLSQP 840 GLIHGGTAGM ANPDVFRRII QAQLGAKDGS QMPHSLNGSF SDVSQMAYPS LGSQDLSIRP 900 SQDGFQM

Sequence ? help Back to Top

Protein Sequence Length: 907 aa Download sequence

MPPPTVPFFL TSTTLAAAAA KPQRPGPPSP PAQQQQPREA RDGSRDACAS YTARMRLNPQ  60
LALRLFDHLL RSGADPDHVA YALALGRCAR GRDRRAAAQL HAHAAKRGAA SHRRVCNGLI  120
HAYAVCGSLL DARKVFDRGH EGDAVAWNSL LRGYAAAGDV NALREFFVGM QARDTVSWNT  180
IIAWCVENGE YEEAIAVFRE MLASMECLPD RVTLAEKMIQ MMPMKPDAAV WKALVGACKT  240
HRNFELGRKA GHMLIEAAPN DHAGSIEIDG VIHEFISGDK SHSSKEDIYE MLSEMCQQLK  300
VAGYVPDTSH VLLDIDDEDV KESSLALHSE KLAIAFGLIS TAPGTPIRIA KNLRVCGDCH  360
NAVKLLSKIY GRCIIVRDAN RFHHFREGSC SCGDFWNPLL LLAPDGPLPT GAGRSTGKCL  420
VSRPASAAVH NTGKRRACPV FSKGATNEKK RRAGRDRRQA LLKERKLGIR SLEPRLGDSM  480
DMSESSEKGM ESNASSGPGN GIPVEWQSQF SSAFACQPSV AAQHQQHAMM DSFAAASAGL  540
WASSDVVSAM SSAAPPRGAG FLAPVPGFLQ QGLGHFPVDS GFIERAARST CFGGGMMAGG  600
PYGAADQAMG DAFGGTAEGL MDHHRNVGND KAEEFAGNGH DEVPSSEVAG GDCFSKGSDS  660
KKRRRPNEVM GTDQVHSSNL PSDSANESVH SKDKGEESSP ATTNGGKSKG KGAKETSESQ  720
KEEYIHVRAR RGQATNSHSL AERLRREKIS ERMKLLQDLV PGCSKVTGKA VMLDEIINYV  780
QSLQRQVEFL SMKLATVNPR LDLNIEGLLS KDLLRFPGVP SSSIGFSPEM MHPQLQLSQP  840
GLIHGGTAGM ANPDVFRRII QAQLGAKDGS QMPHSLNGSF SDVSQMAYPS LGSQDLSIRP  900
SQDGFQM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	434	452	KRRACPVFSKGATNEKKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.3	5e-66	bHLH family protein

Link Out ? help Back to Top
Ensembl	OGLUM09G14350.2