PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM09G14350.3

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 1060aa MW: 114229 Da PI: 7.4693

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM09G14350.3	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.1	3.6e-09	889	937	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + sk Ka +L + ++Y++sLq OGLUM09G14350.3 889 NSHSLAERLRREKISERMKLLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 937 58***********************9....556***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 1060 aa Download sequence
MPPPTVPFFL TSTTLAAAAA KPQRPGPPSP PAQQQQPREA RDGSRDACAS YTARMRLNPQ 60 LALRLFDHLL RSGADPDHVA YALALGRCAR GRDRRAAAQL HAHAAKRGAA SHRRVCNGLI 120 HAYAVCGSLL DARKVFDRGH EGDAVAWNSL LRGYAAAGDV NALREFFVGM QARDTVSWNT 180 IIAWCVENGE YEEAIAVFRE MLASMECLPD RVTLVSVISA ITYLGALAQG LWAHAYVCRK 240 GIEVEERLSS ALINMYSKCG CIEGAVHVFE NLGAQMNVDT WNAMLAGFTA NGCSEKALEL 300 FARMEITGLV PNKITFNTVL NACSHGGFVE EGMGCFEIMT KVYGIEPDIA HYGCMVDLFC 360 RAGLFDKAEK MIQMMPMKPD AAVWKALVGA CKTHRNFELG RKAGHMLIEA APNDHAGSIE 420 IDGVIHEFIS GDKSHSSKED IYEMLSEMCQ QLKVAGYVPD TSHVLLDIDD EDVKESSLAL 480 HSEKLAIAFG LISTAPGTPI RIAKNLRVCG DCHNAVKLLS KIYGRCIIVR DANRFHHFRE 540 GSCSCGDFWN PLLLLAPDGP LPTGAGRSTG KCLVSRPASA AVHNTGKRRA CPVFSKGATN 600 EKKRRAGRDR RQALLKERKL GIRSLEPRLG DSMDMSESSE KGMESNASSG PGNGIPVEWQ 660 SQFSSAFACQ PSVAAQHQQH AMMDSFAAAS AGLWASSDVV SAMSSAAPPR GAGFLAPVPG 720 FLQQGLGHFP VDSGFIERAA RSTCFGGGMM AGGPYGAADQ AMGDAFGGTA EGLMDHHRNV 780 GNDKAEEFAG NGHDEVPSSE VAGGDCFSKG SDSKKRRRPN EVMGTDQVHS SNLPSDSANE 840 SVHSKDKGEE SSPATTNGGK SKGKGAKETS ESQKEEYIHV RARRGQATNS HSLAERLRRE 900 KISERMKLLQ DLVPGCSKVT GKAVMLDEII NYVQSLQRQV EFLSMKLATV NPRLDLNIEG 960 LLSKDLLRFP GVPSSSIGFS PEMMHPQLQL SQPGLIHGGT AGMANPDVFR RIIQAQLGAK 1020 DGSQMPHSLN GSFSDVSQMA YPSLGSQDLS IRPSQDGFQM

Sequence ? help Back to Top

Protein Sequence Length: 1060 aa Download sequence

MPPPTVPFFL TSTTLAAAAA KPQRPGPPSP PAQQQQPREA RDGSRDACAS YTARMRLNPQ  60
LALRLFDHLL RSGADPDHVA YALALGRCAR GRDRRAAAQL HAHAAKRGAA SHRRVCNGLI  120
HAYAVCGSLL DARKVFDRGH EGDAVAWNSL LRGYAAAGDV NALREFFVGM QARDTVSWNT  180
IIAWCVENGE YEEAIAVFRE MLASMECLPD RVTLVSVISA ITYLGALAQG LWAHAYVCRK  240
GIEVEERLSS ALINMYSKCG CIEGAVHVFE NLGAQMNVDT WNAMLAGFTA NGCSEKALEL  300
FARMEITGLV PNKITFNTVL NACSHGGFVE EGMGCFEIMT KVYGIEPDIA HYGCMVDLFC  360
RAGLFDKAEK MIQMMPMKPD AAVWKALVGA CKTHRNFELG RKAGHMLIEA APNDHAGSIE  420
IDGVIHEFIS GDKSHSSKED IYEMLSEMCQ QLKVAGYVPD TSHVLLDIDD EDVKESSLAL  480
HSEKLAIAFG LISTAPGTPI RIAKNLRVCG DCHNAVKLLS KIYGRCIIVR DANRFHHFRE  540
GSCSCGDFWN PLLLLAPDGP LPTGAGRSTG KCLVSRPASA AVHNTGKRRA CPVFSKGATN  600
EKKRRAGRDR RQALLKERKL GIRSLEPRLG DSMDMSESSE KGMESNASSG PGNGIPVEWQ  660
SQFSSAFACQ PSVAAQHQQH AMMDSFAAAS AGLWASSDVV SAMSSAAPPR GAGFLAPVPG  720
FLQQGLGHFP VDSGFIERAA RSTCFGGGMM AGGPYGAADQ AMGDAFGGTA EGLMDHHRNV  780
GNDKAEEFAG NGHDEVPSSE VAGGDCFSKG SDSKKRRRPN EVMGTDQVHS SNLPSDSANE  840
SVHSKDKGEE SSPATTNGGK SKGKGAKETS ESQKEEYIHV RARRGQATNS HSLAERLRRE  900
KISERMKLLQ DLVPGCSKVT GKAVMLDEII NYVQSLQRQV EFLSMKLATV NPRLDLNIEG  960
LLSKDLLRFP GVPSSSIGFS PEMMHPQLQL SQPGLIHGGT AGMANPDVFR RIIQAQLGAK  1020
DGSQMPHSLN GSFSDVSQMA YPSLGSQDLS IRPSQDGFQM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	587	605	KRRACPVFSKGATNEKKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.3	9e-66	bHLH family protein

Link Out ? help Back to Top
Ensembl	OGLUM09G14350.3