PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM09G14350.4

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 1096aa MW: 118226 Da PI: 7.7189

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM09G14350.4	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.1	3.7e-09	925	973	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + sk Ka +L + ++Y++sLq OGLUM09G14350.4 925 NSHSLAERLRREKISERMKLLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 973 58***********************9....556***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 1096 aa Download sequence
MPPPTVPFFL TSTTLAAAAA KPQRPGPPSP PAQQQQPREA RDGSRDACAS YTARMRLNPQ 60 LALRLFDHLL RSGADPDHVA YALALGRCAR GRDRRAAAQL HAHAAKRGAA SHRRVCNGLI 120 HAYAVCGSLL DARKVFDRGH EGDAVAWNSL LRGYAAAGDV NALREFFVGM QARDTVSWNT 180 IIAWCVENGE YEEAIAVFRE MLASMECLPD RVTLVSVISA ITYLGALAQG LWAHAYVCRK 240 GIEVEERLSS ALINMYSKCG CIEGAVHVFE NLGAQMNVDT WNAMLAGFTA NGCSEKALEL 300 FARMEITGLV PNKITFNTVL NACSHGGFVE EGMGCFEIMT KVYGIEPDIA HYGCMVDLFC 360 RAGLFDKAEK MIQMMPMKPD AAVWKALVGA CKTHRNFELG RKAGHMLIEA APNDHAGYVL 420 LSNIYALDGN WTGVHKVRKL MLDRGVQKVP GSSSIEIDGV IHEFISGDKS HSSKEDIYEM 480 LSEMCQQLKV AGYVPDTSHV LLDIDDEDVK ESSLALHSEK LAIAFGLIST APGTPIRIAK 540 NLRVCGDCHN AVKLLSKIYG RCIIVRDANR FHHFREGSCS CGDFWNPLLL LAPDGPLPTG 600 AGRSTGKCLV SRPASAAVHN TGKRRACPVF SKGATNEKKR RAGRDRRQAL LKERKLGIRS 660 LEPRLGDSMD MSESSEKGME SNASSGPGNG IPVEWQSQFS SAFACQPSVA AQHQQHAMMD 720 SFAAASAGLW ASSDVVSAMS SAAPPRGAGF LAPVPGFLQQ GLGHFPVDSG FIERAARSTC 780 FGGGMMAGGP YGAADQAMGD AFGGTAEGLM DHHRNVGNDK AEEFAGNGHD EVPSSEVAGG 840 DCFSKGSDSK KRRRPNEVMG TDQVHSSNLP SDSANESVHS KDKGEESSPA TTNGGKSKGK 900 GAKETSESQK EEYIHVRARR GQATNSHSLA ERLRREKISE RMKLLQDLVP GCSKVTGKAV 960 MLDEIINYVQ SLQRQVEFLS MKLATVNPRL DLNIEGLLSK DLLRFPGVPS SSIGFSPEMM 1020 HPQLQLSQPG LIHGGTAGMA NPDVFRRIIQ AQLGAKDGSQ MPHSLNGSFS DVSQMAYPSL 1080 GSQDLSIRPS QDGFQM

Sequence ? help Back to Top

Protein Sequence Length: 1096 aa Download sequence

MPPPTVPFFL TSTTLAAAAA KPQRPGPPSP PAQQQQPREA RDGSRDACAS YTARMRLNPQ  60
LALRLFDHLL RSGADPDHVA YALALGRCAR GRDRRAAAQL HAHAAKRGAA SHRRVCNGLI  120
HAYAVCGSLL DARKVFDRGH EGDAVAWNSL LRGYAAAGDV NALREFFVGM QARDTVSWNT  180
IIAWCVENGE YEEAIAVFRE MLASMECLPD RVTLVSVISA ITYLGALAQG LWAHAYVCRK  240
GIEVEERLSS ALINMYSKCG CIEGAVHVFE NLGAQMNVDT WNAMLAGFTA NGCSEKALEL  300
FARMEITGLV PNKITFNTVL NACSHGGFVE EGMGCFEIMT KVYGIEPDIA HYGCMVDLFC  360
RAGLFDKAEK MIQMMPMKPD AAVWKALVGA CKTHRNFELG RKAGHMLIEA APNDHAGYVL  420
LSNIYALDGN WTGVHKVRKL MLDRGVQKVP GSSSIEIDGV IHEFISGDKS HSSKEDIYEM  480
LSEMCQQLKV AGYVPDTSHV LLDIDDEDVK ESSLALHSEK LAIAFGLIST APGTPIRIAK  540
NLRVCGDCHN AVKLLSKIYG RCIIVRDANR FHHFREGSCS CGDFWNPLLL LAPDGPLPTG  600
AGRSTGKCLV SRPASAAVHN TGKRRACPVF SKGATNEKKR RAGRDRRQAL LKERKLGIRS  660
LEPRLGDSMD MSESSEKGME SNASSGPGNG IPVEWQSQFS SAFACQPSVA AQHQQHAMMD  720
SFAAASAGLW ASSDVVSAMS SAAPPRGAGF LAPVPGFLQQ GLGHFPVDSG FIERAARSTC  780
FGGGMMAGGP YGAADQAMGD AFGGTAEGLM DHHRNVGNDK AEEFAGNGHD EVPSSEVAGG  840
DCFSKGSDSK KRRRPNEVMG TDQVHSSNLP SDSANESVHS KDKGEESSPA TTNGGKSKGK  900
GAKETSESQK EEYIHVRARR GQATNSHSLA ERLRREKISE RMKLLQDLVP GCSKVTGKAV  960
MLDEIINYVQ SLQRQVEFLS MKLATVNPRL DLNIEGLLSK DLLRFPGVPS SSIGFSPEMM  1020
HPQLQLSQPG LIHGGTAGMA NPDVFRRIIQ AQLGAKDGSQ MPHSLNGSFS DVSQMAYPSL  1080
GSQDLSIRPS QDGFQM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	623	641	KRRACPVFSKGATNEKKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.3	1e-65	bHLH family protein

Link Out ? help Back to Top
Ensembl	OGLUM09G14350.4