PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM09G15160.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 324aa    MW: 33708.9 Da    PI: 4.6944
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM09G15160.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.32.8e-05273292120
                      EEETTTTEEESSHHHHHHHH CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                      ++Cp C k+F+r  n++ H+
  OGLUM09G15160.1 273 FSCPVCFKTFNRYNNMQMHM 292
                      89*****************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    
MENPYYASFL KNHHRRYCFS TPPSPSPSPA GAYSSSSFPF FPTAGVTSTT AATPPTTTAP  60
PSPPLREALP LLSLTPASRG GTTAAQERAR QRGEEDCTDD DDGAEEEGAD EEDVPGSTPG  120
GGGGGGGDRH HQLRRRRAGR LFADLNTKAA AGDPMDVEGS GSGCCAAEAA AAGDDDADVT  180
VALHIGLPSP TAAADLISGL SSAAGRRSST ARRDEEEDEA EEAGGASRDD GDGGDAADAA  240
APLGFASTPI GRLNKGQYWI PTPSQILIGP TQFSCPVCFK TFNRYNNMQM HMWGHGSQYR  300
KGPESLRGIQ PTAMLRLPCY CCAA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-49C2H2 family protein