PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM09G15300.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 398aa    MW: 41712.7 Da    PI: 9.147
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM09G15300.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.97.5e-13328373655
                      HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +++Er RR ri +++ +L+el+P+      k  + a++L +Av+YIk+Lq
  OGLUM09G15300.1 328 SIAERVRRTRISERIRKLQELVPNM----EKQTNTADMLDLAVDYIKELQ 373
                      689*********************7....467*****************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    
MYSAPVSKDL SLQPAGVRTP PQMSSPGLLR YRSAPSTLLG EVCGDFVLPG GGGGGQLQLQ  60
QQRPGSPDHA ADTVLARFLA GHGGHDNKPP RPAAHFAPPE DSMASHQQQL MYQSHQQQQQ  120
MASAMEGLYR TVSSGGTEST AAAAGNSLLR QSSSPAGFLN HLIMDNGYGN MLRAGMGGGG  180
GGGDPRLKGQ LSFSSRQGSV MSQISEMGSE DEELAGGGGS PEAGSNGGGA ARGGYGGGYA  240
MGSSAWEEPS PPATSLLPDS SLPSKRPRDD LPRQLSLPAA SKNSSKPPSS ASAAASPEMA  300
AIEKFLQFQD AVPCKIRAKR GCATHPRSIA ERVRRTRISE RIRKLQELVP NMEKQTNTAD  360
MLDLAVDYIK ELQKQVKVLN DSRSSCTCSA SKQKHFAG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.12e-37bHLH family protein