PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM09G15430.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

SBP

Protein Properties

Length: 401aa MW: 41615.1 Da PI: 8.5722

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM09G15430.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	119.2	2e-37	74	157	1	77
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTS.......SEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCs.......rfhelsefDeekrsCrrrLakhnerrrkkq 77 +CqvegC +dls +k y+ rhkvC +h+k p v+v+gleqrfCqqCs rfh+l efD+ek+sCrrrLa+hnerrrk++ OGLUM09G15430.1 74 RCQVEGCGVDLSGVKPYYCRHKVCYMHAKEPIVVVAGLEQRFCQQCSrcsvhmvRFHQLPEFDQEKKSCRRRLAGHNERRRKPT 157 6*******************************************955555555*************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 401 aa Download sequence
MATGGSGGGG GGGGGGDDVH GLKFGKKIYF EQDAAASASA AAVESSSTSS GGGGKKGKGV 60 AAAAAAPPPP PPPRCQVEGC GVDLSGVKPY YCRHKVCYMH AKEPIVVVAG LEQRFCQQCS 120 RCSVHMVRFH QLPEFDQEKK SCRRRLAGHN ERRRKPTPGP LSSRYGRLAA SFHEEPGRSR 180 SFVVDFSYPR VPSSVRDAWP AIQPGDRMSG SIQWQGGHEL HPHRSAVAGY GDHHAFSSHG 240 GSAAGAPMLH HPAFELTSGG CLAGVATDSS CALSLLSTQP WDITQSTSSH NRSPPMSSTA 300 SAFGGGNNPV SPSVMASNYM AASPGWNSSS RGHDGARNVH LPPPHGVALN EVPTGSVHHG 360 HFSGELELAL QGGAPSNRPE AEHGSGSGAF SHSTNAINWS L

Sequence ? help Back to Top

Protein Sequence Length: 401 aa Download sequence

MATGGSGGGG GGGGGGDDVH GLKFGKKIYF EQDAAASASA AAVESSSTSS GGGGKKGKGV  60
AAAAAAPPPP PPPRCQVEGC GVDLSGVKPY YCRHKVCYMH AKEPIVVVAG LEQRFCQQCS  120
RCSVHMVRFH QLPEFDQEKK SCRRRLAGHN ERRRKPTPGP LSSRYGRLAA SFHEEPGRSR  180
SFVVDFSYPR VPSSVRDAWP AIQPGDRMSG SIQWQGGHEL HPHRSAVAGY GDHHAFSSHG  240
GSAAGAPMLH HPAFELTSGG CLAGVATDSS CALSLLSTQP WDITQSTSSH NRSPPMSSTA  300
SAFGGGNNPV SPSVMASNYM AASPGWNSSS RGHDGARNVH LPPPHGVALN EVPTGSVHHG  360
HFSGELELAL QGGAPSNRPE AEHGSGSGAF SHSTNAINWS L

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42200.1	1e-41	SBP family protein

Link Out ? help Back to Top
Ensembl	OGLUM09G15430.1