PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM09G15460.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB_related

Protein Properties

Length: 646aa MW: 66839.2 Da PI: 10.4006

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM09G15460.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	33.8	8.1e-11	26	76	4	46
S-HHHHHHHHHHHHHTTTT-HHHHHHHHT........TTS-HHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmg........kgRtlkqcksrwqk 46 W t E++ll++av ++G+g+W+++a +++ g+t+ +c++r++ OGLUM09G15460.1 26 WGTLEELLLACAVSRHGTGSWDSVAMEVQtrsplaarPGLTPTSCRLRFRH 76 9999********************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 646 aa Download sequence
MADGSDGPDV SPAAAAAGGG GGGEIWGTLE ELLLACAVSR HGTGSWDSVA MEVQTRSPLA 60 ARPGLTPTSC RLRFRHLHRR FSVGGAAEEE DDDEEAEEGG PDASAADGWM DELRRLRVAE 120 LRREVERCDL SIGTLQTKVK RLREEREQSI HGGGGGEGKP ETANGDERLS SEEPGRSCRE 180 SNSTDLKPAA RAGDHSVKAE EEDEDAAAAK QQASGESVAA SKESSDLRSS ASLRRRRRHK 240 PGADEDADGE EASAPRPPSQ SPSSSSSSQP LAALLDTFAA RFGPLLERLH ESQESDAYRG 300 AIRRHVDIEM VRRRLDASPA GGGGGGAAAA EFYRDLLLLC ANALVFFPRA GPERGAAAEA 360 RALVSASLRL REPKQEPGTA AAAAVAAAAG SPPAEDTRRA EGVVSVGGGG GGAGIVGSLI 420 EKGGKPLIVC RKRSSIAKAA AAAKKEESAE KGEAAEEGEG SDDGEKKVSV SASASKDKAW 480 GLRTKKGRGP GKNSASVGGR KMAKLSEATE AATDGSKKPD KKIAADAATP AKKRNAVDFL 540 KRLNQGSSPS KKKKKGSPMG TRKRAAAATS PEQPQKTRKG PGRKDAGRGG SKKGGKSATP 600 KRSVGRPPSK RGAAAATTPP PSKRAKVNRS EKTAATATAA KRGGRR

Sequence ? help Back to Top

Protein Sequence Length: 646 aa Download sequence

MADGSDGPDV SPAAAAAGGG GGGEIWGTLE ELLLACAVSR HGTGSWDSVA MEVQTRSPLA  60
ARPGLTPTSC RLRFRHLHRR FSVGGAAEEE DDDEEAEEGG PDASAADGWM DELRRLRVAE  120
LRREVERCDL SIGTLQTKVK RLREEREQSI HGGGGGEGKP ETANGDERLS SEEPGRSCRE  180
SNSTDLKPAA RAGDHSVKAE EEDEDAAAAK QQASGESVAA SKESSDLRSS ASLRRRRRHK  240
PGADEDADGE EASAPRPPSQ SPSSSSSSQP LAALLDTFAA RFGPLLERLH ESQESDAYRG  300
AIRRHVDIEM VRRRLDASPA GGGGGGAAAA EFYRDLLLLC ANALVFFPRA GPERGAAAEA  360
RALVSASLRL REPKQEPGTA AAAAVAAAAG SPPAEDTRRA EGVVSVGGGG GGAGIVGSLI  420
EKGGKPLIVC RKRSSIAKAA AAAKKEESAE KGEAAEEGEG SDDGEKKVSV SASASKDKAW  480
GLRTKKGRGP GKNSASVGGR KMAKLSEATE AATDGSKKPD KKIAADAATP AKKRNAVDFL  540
KRLNQGSSPS KKKKKGSPMG TRKRAAAATS PEQPQKTRKG PGRKDAGRGG SKKGGKSATP  600
KRSVGRPPSK RGAAAATTPP PSKRAKVNRS EKTAATATAA KRGGRR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	532	554	KKRNAVDFLKRLNQGSSPSKKKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42150.1	9e-13	MYB_related family protein

Link Out ? help Back to Top
Ensembl	OGLUM09G15460.1