PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM09G16320.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

SBP

Protein Properties

Length: 479aa MW: 50475.2 Da PI: 7.7277

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM09G16320.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	129.3	1.4e-40	115	191	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v+gC+adls+ ++yhrrhkvCe hsk+pvv+vsg+e rfCqqCsrfh l efDe+krsCr+rL++hn+rrrk+qa OGLUM09G16320.1 115 CAVDGCKADLSKHRDYHRRHKVCEPHSKTPVVVVSGREMRFCQQCSRFHLLGEFDEAKRSCRKRLDGHNRRRRKPQA 191 **************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 479 aa Download sequence
MDWDLKMPVS WDLAELEHNA VPNMAAAASA AEPGIAAVAA SRGAPGRPEC SVDLKLGGLG 60 EFGAADALKE PAAAAKAPVS SAAAAASVAK VPPSTSTLKR PRGGGGGGGG QCPSCAVDGC 120 KADLSKHRDY HRRHKVCEPH SKTPVVVVSG REMRFCQQCS RFHLLGEFDE AKRSCRKRLD 180 GHNRRRRKPQ ADSMSSGSFM TSQQGTRIAS FTPPRPEPSW PGIIKSEETP YYSHHHHPHP 240 VMTSRQPHFV GSPSSPTTAA FSPKEGRRFP FLHEGDQISF GGGGGAAAAA TLEISVCQPL 300 LKTTVVAPPP PESSSSNKMF SSDGLTTATT TTTTAHHHHH HHQVLDSDCA LSLLSSPANS 360 SSVDVSRMVQ PSPAAAAGAE HHHHHHHHQI PMAQPLVPNL QQQFGGSSPW FASSAAAAAV 420 AGGGFACPSM DSEQQQQQQL NAVLVPGSNE NEMNYHGMFH VGGEGSSDGT SPSLPFSWQ

Sequence ? help Back to Top

Protein Sequence Length: 479 aa Download sequence

MDWDLKMPVS WDLAELEHNA VPNMAAAASA AEPGIAAVAA SRGAPGRPEC SVDLKLGGLG  60
EFGAADALKE PAAAAKAPVS SAAAAASVAK VPPSTSTLKR PRGGGGGGGG QCPSCAVDGC  120
KADLSKHRDY HRRHKVCEPH SKTPVVVVSG REMRFCQQCS RFHLLGEFDE AKRSCRKRLD  180
GHNRRRRKPQ ADSMSSGSFM TSQQGTRIAS FTPPRPEPSW PGIIKSEETP YYSHHHHPHP  240
VMTSRQPHFV GSPSSPTTAA FSPKEGRRFP FLHEGDQISF GGGGGAAAAA TLEISVCQPL  300
LKTTVVAPPP PESSSSNKMF SSDGLTTATT TTTTAHHHHH HHQVLDSDCA LSLLSSPANS  360
SSVDVSRMVQ PSPAAAAGAE HHHHHHHHQI PMAQPLVPNL QQQFGGSSPW FASSAAAAAV  420
AGGGFACPSM DSEQQQQQQL NAVLVPGSNE NEMNYHGMFH VGGEGSSDGT SPSLPFSWQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	172	189	KRSCRKRLDGHNRRRRKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50670.1	3e-39	SBP family protein

Link Out ? help Back to Top
Ensembl	OGLUM09G16320.1