PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM09G16330.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MIKC_MADS

Protein Properties

Length: 191aa MW: 21902.9 Da PI: 9.2114

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM09G16330.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	100.4	6.7e-32	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s OGLUM09G16330.1 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 59 79***********************************************96 PP
2	K-box	18.3	1e-07	102	132	68	98
K-box 68 kKnellleqieelqkkekelqeenkaLrkkl 98 +++++l+q+ +lq++e++l e+nk+Lr+k OGLUM09G16330.1 102 ARTQHMLDQLTDLQRREQMLCEANKCLRRKE 132 579*************************996 PP

Sequence ? help Back to Top
Protein Sequence Length: 191 aa Download sequence
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCSG 60 QSMTRTLERY QKCSYGGPDT AIQNKENELV QSSRNEYLKL KARTQHMLDQ LTDLQRREQM 120 LCEANKCLRR KEKLEESNQL HGQVWEHGAT LLGYERQSPH AVQQVPPHGG NGFFHSLEAA 180 AEPTLQIGLT D

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G24260.1	3e-61	MIKC_MADS family protein

Link Out ? help Back to Top
Ensembl	OGLUM09G16330.1