PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM09G17250.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 276aa    MW: 28927.7 Da    PI: 6.6736
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM09G17250.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.73.6e-12111156454
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      +h e+Er+RR+++N +f  Lr  +P+       +++Ka+ L  A  YI +L
  OGLUM09G17250.1 111 SHVEAERQRREKLNRRFCDLRAAVPTV-----SRMDKASLLADAAAYIAEL 156
                      89************************6.....49**************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    
MDELLSPCSS FSPLSPSSMF STGAAAAAAH AVLEFTSCEV PDEWLMGDVV VAKNEEGVGG  60
GELWPVFAGG SLSPDSELSE LPRSFEAAAA QRPAKRRGRK PGPRPDGPTV SHVEAERQRR  120
EKLNRRFCDL RAAVPTVSRM DKASLLADAA AYIAELRARV ARLESDARQA AAARFEPSSC  180
GGGGGGGGAA PGLDEAVEVR KMGRDAAAVR VTTTGARHAP ARLMGALRSL ELPVQHACVM  240
RVHGATTVQE VLVDVPAALQ DGDALRAALL QRLQDS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32640.18e-11bHLH family protein