PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM09G17420.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 246aa    MW: 25536.2 Da    PI: 5.3634
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM09G17420.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.71.2e-174597155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     + y+GVr++   grWv+e+r+p ++g  +r +lg++ tae Aa+a++aa+ +l+g
  OGLUM09G17420.1 45 PVYRGVRRRGGAGRWVCEVRVPGKRG--ARLWLGTYVTAEAAARAHDAAMIALRG 97
                     68*******************95544..*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    
MDMAGHEVNS SSSSSGAESS SSSSGRQQYK KRPAGRTKFR ETRHPVYRGV RRRGGAGRWV  60
CEVRVPGKRG ARLWLGTYVT AEAAARAHDA AMIALRGGAG GGGAACLNFQ DSAWLLAVPP  120
AAPSDLAGVR RAATEAVAGF LQRNKTTNGA SVAEAIDEAT SGVSKPSPLA NNAGSSETPG  180
PSSIDGTADT AAGAALDMFE LDFFGEMDYD TYYASLAEGL LMEPPLAATA LWDNGDEGAD  240
IALWSY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51990.16e-19ERF family protein