PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM09G17430.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 238aa    MW: 25390.1 Da    PI: 4.8433
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM09G17430.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.85.5e-184999153
              AP2  1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkl 53
                     + ++GVr++ + grWv+e+r+p   g +  r +lg+f+tae+Aa+a++aa++++
  OGLUM09G17430.1 49 PVFRGVRRRGNAGRWVCEVRVP---GrRGCRLWLGTFDTAEGAARAHDAAMLAI 99
                     579******************9...6445**********************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    
MCGIKQEMSG ESSGSPCSSA SAERQHQTVW TAPPKRPAGR TKFRETRHPV FRGVRRRGNA  60
GRWVCEVRVP GRRGCRLWLG TFDTAEGAAR AHDAAMLAIN AGGGGGGGAC CLNFADSAWL  120
LAVPRSYRTL ADVRHAVAEA VEDFFRRRLA DDALSATSSS STTPSTPRTD DDEESAATDG  180
DESSSPASDL AFELDVLSDM GWDLYYASLA QGMLMEPPSA ALGDDGDAIL ADVPLWSY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25470.13e-35ERF family protein