PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM09G17660.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

HSF

Protein Properties

Length: 454aa MW: 47016.2 Da PI: 4.9112

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM09G17660.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	113.4	1.5e-35	39	129	2	101
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 Fl+k+y+++ed++++++isw+e+g++fvv+ + efa+++LpkyFkh+nf+SFvRQLn+YgFkk+ ++ weF+++ F++g+k+ll+ OGLUM09G17660.1 39 FLTKTYQLVEDPAVDDVISWNEDGSTFVVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFKKIVPDR---------WEFANDCFRRGEKRLLC 123 9**************************************************************999.........************* PP XXXXXX CS HSF_DNA-bind 96 kikrkk 101 +i+r+k OGLUM09G17660.1 124 DIHRRK 129 **98 PP

Sequence ? help Back to Top
Protein Sequence Length: 454 aa Download sequence
MAEQGAGEAD ASGGEPPPAA VMTAAAEALA GQRSLPTPFL TKTYQLVEDP AVDDVISWNE 60 DGSTFVVWRP AEFARDLLPK YFKHNNFSSF VRQLNTYGFK KIVPDRWEFA NDCFRRGEKR 120 LLCDIHRRKV VAAAAAAPPP PSPGMATAAA AVASGAVTVA AAPIPMALPV TRAGSPAHSS 180 EEQVLSSNSG SGEEHRQASG SGSAPGGGGG GSASGGDMGE ENERLRRENA RLTRELGHMK 240 KLCNNILLLM SKYAATQHVE GSAGISSIAN CSGESSEAVP PPPPLPPAIL DLMPSCPALA 300 TAAAAAGLAI DGEPDPSARL FGVSIGLKRT RDDAAAAADE DGGGEDQAEH GGADVKPEAA 360 DPHPAGGGGG SSTEASPESH PWPIYRPTPM YHAVRPTCNG PDRAGSDQDG SSSSQTMGPG 420 EFDDLQKMMV VQQSNFVMHW GRSECGSGVR GFGW

Sequence ? help Back to Top

Protein Sequence Length: 454 aa Download sequence

MAEQGAGEAD ASGGEPPPAA VMTAAAEALA GQRSLPTPFL TKTYQLVEDP AVDDVISWNE  60
DGSTFVVWRP AEFARDLLPK YFKHNNFSSF VRQLNTYGFK KIVPDRWEFA NDCFRRGEKR  120
LLCDIHRRKV VAAAAAAPPP PSPGMATAAA AVASGAVTVA AAPIPMALPV TRAGSPAHSS  180
EEQVLSSNSG SGEEHRQASG SGSAPGGGGG GSASGGDMGE ENERLRRENA RLTRELGHMK  240
KLCNNILLLM SKYAATQHVE GSAGISSIAN CSGESSEAVP PPPPLPPAIL DLMPSCPALA  300
TAAAAAGLAI DGEPDPSARL FGVSIGLKRT RDDAAAAADE DGGGEDQAEH GGADVKPEAA  360
DPHPAGGGGG SSTEASPESH PWPIYRPTPM YHAVRPTCNG PDRAGSDQDG SSSSQTMGPG  420
EFDDLQKMMV VQQSNFVMHW GRSECGSGVR GFGW

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G11660.1	1e-58	HSF family protein

Link Out ? help Back to Top
Ensembl	OGLUM09G17660.1