PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM09G17730.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

DBB

Protein Properties

Length: 244aa MW: 26888.1 Da PI: 6.2728

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM09G17730.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	23.8	9.1e-08	3	30	4	31
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedCll 31 ++C+ +e+ ++ lfC ++ lC++C + OGLUM09G17730.1 3 TICDVCESAPAVLFCVADEAALCRSCDE 30 68************************87 PP
2	zf-B_box	27.5	6.3e-09	85	124	2	37
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37 + ++C+ +e+ ++ ++Ce +++ lC +C ++ H g H OGLUM09G17730.1 85 KVQRCDICENAPAFFYCEIDGTSLCLSCDMTVHVGgkrtH 124 6799*****************************6655556 PP

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence
MRTICDVCES APAVLFCVAD EAALCRSCDE KVPPLSNPAF VLCSTTRTRR SPLAESNGSA 60 EEHDVHMCNK LARRHVRVGL ADPNKVQRCD ICENAPAFFY CEIDGTSLCL SCDMTVHVGG 120 KRTHGRYLLL RQRVEFPGDK PGHMDDVAMQ QKDPENRTDQ KKAPHSVTKE QMANHHNVSD 180 DPASDGNCDD QGNIDSKMID LNMRPVRTHG QGSNSQTQGV DVSVNNHDSP GVVPTCNFER 240 EANK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38960.3	4e-70	DBB family protein

Link Out ? help Back to Top
Ensembl	OGLUM09G17730.1