PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM09G17780.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

HB-other

Protein Properties

Length: 201aa MW: 21484.6 Da PI: 4.8381

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM09G17780.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	27.1	7.1e-09	31	71	4	44
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqV 44 + +f++eq++ Le++F+ + ++ +++ +LA++lgL+ rq OGLUM09G17780.1 31 KKRFSEEQIKSLESMFATQTKLEPRQKLQLARELGLQPRQL 71 456***********************************995 PP

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence
MDGEEDSEWM MMDVGGKGGK GGGGGGAADR KKRFSEEQIK SLESMFATQT KLEPRQKLQL 60 ARELGLQPRQ LEKLAEMLQE PRGKYGDNAG DDARSGGVAG MKKEEFVGAG GAATLYSSAE 120 GGGTTTTTTA KLMPHFGSDD VDAGLFLRPS SQHHPPPPHA GAGFTSSEPA ADHQSFNFHS 180 SWPSSTEQTC SSTPWWEFES E

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	15	23	GGKGGKGGG
2	18	26	GGKGGKGGG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46680.2	3e-15	HD-ZIP family protein

Link Out ? help Back to Top
Ensembl	OGLUM09G17780.1