PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM09G17970.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family SRS
Protein Properties Length: 317aa    MW: 32149.7 Da    PI: 8.754
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM09G17970.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702228.21.5e-70922423153
           DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaes 96 
                       g++sCqdCGnqakkdC+h+RCRtCCksrgf CathvkstWvpaakrrerqqqlaa++++aaa+a  a + r+ +++ +++ ++++ ++ss+++
  OGLUM09G17970.1  92 GGGISCQDCGNQAKKDCTHMRCRTCCKSRGFACATHVKSTWVPAAKRRERQQQLAALAASAAATAGGAGPSRDPTKRPRARPSATTPTTSSGDQ 185
                      5789********************************************************99999877777777778889999999999***** PP

           DUF702  97 kkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153
                      ++ + ++++P+evsseavfrcvr++ vd++e+e+aYqtavsigGhvfkGiL+d G+e
  OGLUM09G17970.1 186 QMVTVAERFPREVSSEAVFRCVRLGPVDQAEAEVAYQTAVSIGGHVFKGILHDVGPE 242
                      *******************************************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    
MAGFPLGGGS HSRDNPAPPV PPVHPADAAS FLYATRGGSF QLWQQQEQQP FYASNIIRFA  60
DDAPPAPSLA GASSSSSSRG MRSSGGGGGG GGGGISCQDC GNQAKKDCTH MRCRTCCKSR  120
GFACATHVKS TWVPAAKRRE RQQQLAALAA SAAATAGGAG PSRDPTKRPR ARPSATTPTT  180
SSGDQQMVTV AERFPREVSS EAVFRCVRLG PVDQAEAEVA YQTAVSIGGH VFKGILHDVG  240
PEALAVAGGG GAGASEYHFR LTGDGSSPST AAAGEAGSGG GGNIIVSSAV VMDPYPTPGP  300
YGAFPAGTPF FHGHPRP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51060.14e-39SRS family protein