PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM09G19780.2
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 374aa    MW: 42257.8 Da    PI: 9.21
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM09G19780.2genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.42e-1612911398
                     TT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
               B3 13 sgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                     + r  +p +f  ++ ++++++  +++l d+sg++W+ +l  +  s+++++  GWkeFv++n ++ g f+vF++d+ s+f   v+vf+
  OGLUM09G19780.2 12 EERKKIPSSFN-QClQNQPTG--MVSLVDRSGNKWSAEL--TSDSEGFFFVHGWKEFVRDNSIQCGQFLVFTYDKWSQF--SVTVFE 91
                     567899***98.554766665..8***************..********************************966888..888876 PP
2B352.58.9e-17268359398
                      EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
               B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                      ++++ s+v     + +p +f++e+   ++++k +tl d++g+ Wev++ y   ++   +++GW +F+  n+L+  D++vF+l+++++   +v++
  OGLUM09G19780.2 268 QIMMESYVYVGFFMNIPCEFVRECL--PRTNKRITLWDPQGKAWEVNYVYYSDRSVGSFSGGWGKFAVGNNLEKFDVCVFELVQKDN--IKVHI 357
                      6789999999**************5..345678***************995555556799*********************998444..57887 PP

                      E- CS
               B3  97 fr 98 
                      +r
  OGLUM09G19780.2 358 YR 359
                      76 PP
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    
MCLIGCSEWK EEERKKIPSS FNQCLQNQPT GMVSLVDRSG NKWSAELTSD SEGFFFVHGW  60
KEFVRDNSIQ CGQFLVFTYD KWSQFSVTVF EPSGIDKIST FSAHPSKNVI IKTESDEGGM  120
VTAAITTEKM APALKENNGI TGKRTRDVDY LMEDRVVVFK KSSEANVCES SRRKRAGASA  180
GKSKVTSTSH NSTRGSSCSS DEDNSSSKSP NPPFLMRFLS GEVSRRGVSK GQRQLTVISQ  240
RRPVTEAEKD HALQRAREFK SKNPFAVQIM MESYVYVGFF MNIPCEFVRE CLPRTNKRIT  300
LWDPQGKAWE VNYVYYSDRS VGSFSGGWGK FAVGNNLEKF DVCVFELVQK DNIKVHIYRV  360
VPEITPHKLR SDPK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.13e-19B3 family protein