PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM09G20140.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 165aa MW: 16975.7 Da PI: 7.1961

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM09G20140.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.1	0.00029	49	71	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C++ F ++ L H++ H OGLUM09G20140.1 49 FSCNYCHRKFFSSQALGGHQNAH 71 89*****************9988 PP

Sequence ? help Back to Top
Protein Sequence Length: 165 aa Download sequence
MESEPAQVHG GVNLNLRVLE TSPRRRSANG GGGGAAPAAA AAVDPREAFS CNYCHRKFFS 60 SQALGGHQNA HKLERTLAKR SRDIVMTAAV SPSPSSSSSS RAVHGFDGVA GGFFWTAPPY 120 GHAAAAEAAE EDHDVAPPAP PPADGGCGGG RYGRNGEEID LSLKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57520.1	3e-18	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OGLUM09G20140.1