PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM09G20340.2
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HB-other
Protein Properties Length: 318aa    MW: 33495.2 Da    PI: 6.798
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM09G20340.2genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox231.3e-07121163244
                      T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHH CS
         Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqV 44 
                      rk+ ++ k+q  +Le+ F+++++++ ++++ LA++l+L+ +qV
  OGLUM09G20340.2 121 RKKLRLFKDQAAVLEDTFKEHNTVNPKQKAVLARQLNLKSQQV 163
                      566667799*********************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    
MVTGDETGAV AYLPIASSPP DQFPKSSSSS SGEAENPRSS TTPMAPRILY RDAGLDDDSE  60
DDLPAGFLGA AAAVGWTIRL SPAASYLNST LSSLNGKHGA PSAATAAGGG SDNEDSGGGS  120
RKKLRLFKDQ AAVLEDTFKE HNTVNPKQKA VLARQLNLKS QQVPGGGVVP EQEGENEAEA  180
DEGGLRAAQA LLRAAPAAAA TAARAPCPRP AEGERRERER KREGTKRGGR RERERMTCGA  240
HILLGPTIFI VGQHRHVSET ALQNYQESQV ALIRVTFKGV KVDLFHQRGQ VAEGGPALGR  300
TVDFGPFCMA QDAVSDSN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1120126SRKKLRL
2215223RRERERKRE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17460.13e-13HD-ZIP family protein