PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM09G20980.2

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 543aa MW: 59800.9 Da PI: 5.6333

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM09G20980.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.3	0.00052	27	48	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC++C++ F ++ n++rH r+H OGLUM09G20980.2 27 KCTKCPREFCSSINYRRHTRVH 48 7*******************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 543 aa Download sequence
MPNVRSSPVA DLPGWPLFSP PKLQLQKCTK CPREFCSSIN YRRHTRVHRR TLQIEKDFLK 60 NRDNIAAFWD KLTLDQAKTI LSLADVDIEG VTGPSILAAL STWMCKPGYA SLPLPYARAG 120 NQLLDLIETT ASRLPVSSNE LFSMLDEASE NTFLSTNPTA CIQKFIFNGE ADKVAPELKN 180 AVACTSYMLE QKLVEAWSAD KAAEALRCQK LLVEEEEAAQ KRQAELIERK RMKKLRQKEQ 240 RLKDLKDEDV TDRFPGSVDG TTDSSGILSL KEATSDPGLY EQEDTQLPTP VASEDNSSFA 300 DLPVEHDIHD PGHEVNPSVT LNQQVFSRHR VGRTENFAQN SFASGGSAIG SKHPASVRHS 360 HYRGANAGAV SNRNKTWTWK VRTEIEEHSP KDELNIDDGQ EIVLNKKSRV LIGSISVAIE 420 DGSECLEDNQ YTKEYPTPAS QLNIGNHPVT KVMQPFNHGE EGNGYNAHND VEVSITPTAQ 480 DHSSSGVMTD GNNCSSCCNA GLAEGGGLRG AIFSSKEAAA FLSQRWKEAI NADHVKLVLC 540 PEG

Sequence ? help Back to Top

Protein Sequence Length: 543 aa Download sequence

MPNVRSSPVA DLPGWPLFSP PKLQLQKCTK CPREFCSSIN YRRHTRVHRR TLQIEKDFLK  60
NRDNIAAFWD KLTLDQAKTI LSLADVDIEG VTGPSILAAL STWMCKPGYA SLPLPYARAG  120
NQLLDLIETT ASRLPVSSNE LFSMLDEASE NTFLSTNPTA CIQKFIFNGE ADKVAPELKN  180
AVACTSYMLE QKLVEAWSAD KAAEALRCQK LLVEEEEAAQ KRQAELIERK RMKKLRQKEQ  240
RLKDLKDEDV TDRFPGSVDG TTDSSGILSL KEATSDPGLY EQEDTQLPTP VASEDNSSFA  300
DLPVEHDIHD PGHEVNPSVT LNQQVFSRHR VGRTENFAQN SFASGGSAIG SKHPASVRHS  360
HYRGANAGAV SNRNKTWTWK VRTEIEEHSP KDELNIDDGQ EIVLNKKSRV LIGSISVAIE  420
DGSECLEDNQ YTKEYPTPAS QLNIGNHPVT KVMQPFNHGE EGNGYNAHND VEVSITPTAQ  480
DHSSSGVMTD GNNCSSCCNA GLAEGGGLRG AIFSSKEAAA FLSQRWKEAI NADHVKLVLC  540
PEG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	228	235	ERKRMKKL
2	233	243	KKLRQKEQRLK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25610.1	7e-86	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OGLUM09G20980.2